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. 2025 Jun 20;14(13):1907. doi: 10.3390/plants14131907
ABS/CS0 absorbed photon flux per excited cross-section of PSII (or also apparent antenna size) at t = 0
ABS/RC average absorbed photon flux per PSII reaction center
DI0/RC the flux of energy dissipated per active RC
ET0/RC electron transport flux from QA to PQ per active PSII
TR0/RC maximum trapped exciton flux per active PSII
RE0/RC electron transport flux from QA to final PSI acceptors per active PSII
Sm the normalized area between the OJIP curve and the line Fm (a proxy of the number of electron carriers per electron transport chain)—representing energy necessary for the closure of all reaction centers
N the number indicating how many times QA is reduced while fluorescence reaches its maximal value (number of QA redox turnovers until Fm is reached)
CS CS, a cross-section of PSII
VL relative variable fluorescence at L-band
VK relative variable fluorescence at 300 μs (K-step)
VJ relative variable fluorescence at 2 ms (J-step)
VI relative variable fluorescence at 30 ms (I-step)
VK/VJ the ratio of variable fluorescence in time 0.3 ms to variable fluorescence in time 2 ms as an indicator of the PSII donor side limitation
ΔV/Δto initial slope (in ms-1) of O-J (the rate of accumulation of closed reaction centers), a ratio expressing the rate of accumulation of closed reaction centers
F0 initial fluorescence value
Fm maximal fluorescence intensity
FV variable chlorophyll fluorescence (Fm − Fo)
FV/F0 the ratio between the rate constants of photochemicaland nonphotochemical deactivation of excited Chl molecules
FV/FM the maximum quantum efficiency of PSII under dark adaptation
φP0 the maximum quantum yield of primary PSII photochemistry
ψE0 the efficiency with which a PSII-trapped electron is transferred from QA to QB
φE0 the quantum yield of electron transport from QA to PQ
ψR0 the efficiency with which a PSII trapped electron is transferred to final PSI acceptors
φR0 the quantum yield of electron transport from QA to final PSI acceptors
δR0 the efficiency with which an electron from QB is transferred to the final PSI acceptors
φD0 quantum yield of energy dissipation in PSII antenna (maximum quantum yield of nonphotochemical deexcitation)
PIABS performance index (potential) for energy conservation from exciton to reduction of intersystem electron acceptors
PITOT performance index (potential) for energy conservation from exciton to reduction of PSI end acceptors; QA and QB, primary and secondary quinone electron acceptors
SFIABS PSII structure-function index
PQ the pool of free plastoquinones
PQH2 Plastoquinols
PC plastocyanins
PSI Photosystem I
PSII Photosystem II
OEC oxygen-evolving complex
DF daughter frond
MF mother frond
GDF granddaughter frond
MRt modulated 820-nm reflection intensity at time t
Vox the rate of P700 oxidation
Vred the rate of P700 re-reduction
LCP Light compensation point
ETRmax maximum relative electron transport rate at saturating light
rETR relative electron transport rate
α the slope of the linear phase at sub-saturating light of the ETR vs. E curves
β coefficient of downregulation/photoinhibition
Ek the minimum saturating irradiance
RLC Rapid Light Curve