| ABS/CS0 | absorbed photon flux per excited cross-section of PSII (or also apparent antenna size) at t = 0 |
| ABS/RC | average absorbed photon flux per PSII reaction center |
| DI0/RC | the flux of energy dissipated per active RC |
| ET0/RC | electron transport flux from QA− to PQ per active PSII |
| TR0/RC | maximum trapped exciton flux per active PSII |
| RE0/RC | electron transport flux from QA− to final PSI acceptors per active PSII |
| Sm | the normalized area between the OJIP curve and the line Fm (a proxy of the number of electron carriers per electron transport chain)—representing energy necessary for the closure of all reaction centers |
| N | the number indicating how many times QA is reduced while fluorescence reaches its maximal value (number of QA redox turnovers until Fm is reached) |
| CS | CS, a cross-section of PSII |
| VL | relative variable fluorescence at L-band |
| VK | relative variable fluorescence at 300 μs (K-step) |
| VJ | relative variable fluorescence at 2 ms (J-step) |
| VI | relative variable fluorescence at 30 ms (I-step) |
| VK/VJ | the ratio of variable fluorescence in time 0.3 ms to variable fluorescence in time 2 ms as an indicator of the PSII donor side limitation |
| ΔV/Δto | initial slope (in ms-1) of O-J (the rate of accumulation of closed reaction centers), a ratio expressing the rate of accumulation of closed reaction centers |
| F0 | initial fluorescence value |
| Fm | maximal fluorescence intensity |
| FV | variable chlorophyll fluorescence (Fm − Fo) |
| FV/F0 | the ratio between the rate constants of photochemicaland nonphotochemical deactivation of excited Chl molecules |
| FV/FM | the maximum quantum efficiency of PSII under dark adaptation |
| φP0 | the maximum quantum yield of primary PSII photochemistry |
| ψE0 | the efficiency with which a PSII-trapped electron is transferred from QA to QB |
| φE0 | the quantum yield of electron transport from QA− to PQ |
| ψR0 | the efficiency with which a PSII trapped electron is transferred to final PSI acceptors |
| φR0 | the quantum yield of electron transport from QA− to final PSI acceptors |
| δR0 | the efficiency with which an electron from QB is transferred to the final PSI acceptors |
| φD0 | quantum yield of energy dissipation in PSII antenna (maximum quantum yield of nonphotochemical deexcitation) |
| PIABS | performance index (potential) for energy conservation from exciton to reduction of intersystem electron acceptors |
| PITOT | performance index (potential) for energy conservation from exciton to reduction of PSI end acceptors; QA and QB, primary and secondary quinone electron acceptors |
| SFIABS | PSII structure-function index |
| PQ | the pool of free plastoquinones |
| PQH2 | Plastoquinols |
| PC | plastocyanins |
| PSI | Photosystem I |
| PSII | Photosystem II |
| OEC | oxygen-evolving complex |
| DF | daughter frond |
| MF | mother frond |
| GDF | granddaughter frond |
| MRt | modulated 820-nm reflection intensity at time t |
| Vox | the rate of P700 oxidation |
| Vred | the rate of P700 re-reduction |
| LCP | Light compensation point |
| ETRmax | maximum relative electron transport rate at saturating light |
| rETR | relative electron transport rate |
| α | the slope of the linear phase at sub-saturating light of the ETR vs. E curves |
| β | coefficient of downregulation/photoinhibition |
| Ek | the minimum saturating irradiance |
| RLC | Rapid Light Curve |