Table 2.
Oligonucleotides for TaqMan Assays[Note]
| SNP and Type of Oligonucleotide | Sequence of Oligonucleotide |
| rs1332720: | |
| Primer-F | CCCATAGAGGGCAACCACTTG |
| Primer-R | GCACTGAAAAGGAAGTGAACAAAGG |
| Probe-1 | CCAGAGTGATTTCTC |
| Probe-2 | CCAGAGTAATTTCTC |
| rs1379146: | |
| Primer-F | TGGAAAATATGGATGCAGGTAGCTT |
| Primer-R | AGCATGTCAGGCTCTTCTAAGAC |
| Probe-1 | CCCTCAAGAGTTTTTGA |
| Probe-2 | CCTCAAGAGATTTTGA |
| rs1158928: | |
| Primer-F | CCTTTTTTACTGTATACATTAAGAACTTATTGTTGCT |
| Primer-R | GGTGGTGTGTAAATCACTTATAAATCTGGAA |
| Probe-1 | AAAGGTTAAGAGACAAAAG |
| Probe-2 | AAAAGGTTAAAAGACAAAAG |
| rs1385695: | |
| Primer-F | ACACATCAAACCCACGCATAAAC |
| Primer-R | ACACTGAGGAAACTGTACAGCATTT |
| Probe-1 | ACTCCATTTAGGCTATTT |
| Probe-2 | CACTCCATTTAAGCTATTT |
| rs775362: | |
| Primer-F | CTGCTTAATCCTATTCAAAGTCCTGGTT |
| Primer-R | AGCTCAGTCAGTTAAGCCACATTTA |
| Probe-1 | ACTTTGCAGAATTCGTTGTG |
| Probe-2 | CTTTGCAGAATTCATTGTG |
| rs1041668: | |
| Primer-F | GCCTCCCTTTACCTACTAGACAACA |
| Primer-R | CAAATCACACTTAGGAGGTGCTACA |
| Probe-1 | ATAAAATCAACTTCATGAAGTAG |
| Probe-2 | AAAATCAACTTCATAAAGTAG |
| rs5964577: | |
| Primer-F | CGTCTGGGAAATAATATTCAAAATCCAAAACA |
| Primer-R | AAGTGCACTGAGTGTTACAAAAAAGAAG |
| Probe-1 | CACCAGTTGATACTTATTAG |
| Probe-2 | CCAGTTGATACATATTAG |
| rs532649: | |
| Primer-F | ACAACCAATATCTTGATCTATGTCACCG |
| Primer-R | TGTACTGGAGTCCCACAGATTCTAT |
| Probe-1 | ATATCAAGTAGTATAAAGCTCA |
| Probe-2 | ATCAAGTAGTATAGAGCTCA |
| rs989345: | |
| Primer-F | CAGAGAAAGCACAAAATGGCTACAA |
| Primer-R | ACACTGAGTGAATATCTGAACACCTCTA |
| Probe-1 | AGTCTGAGAATATACGCAAAG |
| Probe-2 | CTGAGAATATGCGCAAAG |
| rs938059: | |
| Primer-F | CTGGTGAACAATAAATTTGATATAAAAGCTATTTAATACATAGA |
| Primer-R | AACTCTTGAAGTGCCCTTCTTAATTCA |
| Probe-1 | CATTTTCCATAGGTCCTCTAT |
| Probe-2 | ATTTTCCATAGGTACTCTAT |
| rs925391: | |
| Primer-F | GCTTGGGCAGGAAGGAGAAC |
| Primer-R | TGAGAAGGCCATATTCCAAAGCATT |
| Probe-1 | TTCACATATAATCATGATATAAG |
| Probe-2 | TTCACATATAATCATAATATAAG |
| rs5919287: | |
| Primer-F | GGACTAGAAGAAGGGAAGACAATGG |
| Primer-R | GGTAAGTGGAAGGTACAATGCCAAA |
| Probe-1 | TAGAGATGTTACCCCTGGTTT |
| Probe-2 | TAGAGATGTTACCCTTGGTTT |
| rs2221799: | |
| Primer-F | ACATGAAAGTTTGAAAGTCCAATCCTACT |
| Primer-R | GGATTTCAAGAGCAAAGTTTCAGACAA |
| Probe-1 | TTCAAGATGAAGTATAAGTTAG |
| Probe-2 | TTCAAGATGAAGTATAGGTTAG |
| rs10521339: | |
| Primer-F | CATCTGTGCAGCTCTTTATGGATTG |
| Primer-R | TCAGGTCTTAGAAAGTTAGAACTAGAAGGG |
| Probe-1 | AAAAGATTCTCATATAATACTAAC |
| Probe-2 | AAAAGATTCTCATATTATACTAAC |
| rs2223841: | |
| Primer-F | CTGGGCACTTTTAGCCTATTCAGAT |
| Primer-R | GGAATGAGACCCCTGTCAAGAA |
| Probe-1 | CCAGAGTGCTAGTGGAGT |
| Probe-2 | CAGAGTGCTGGTGGAGT |
| rs2207081: | |
| Primer-F | GGATGAATTGTACTTACAAACTGTGACTAAC |
| Primer-R | GCAAATTGTTCAAAGATTAGTCACTTGGATA |
| Probe-1 | TCTTTTAAAACAGAGCTTC |
| Probe-2 | TTTTAAAGCAGAGCTTC |
| rs2497935: | |
| Primer-F | GATCAAGCATGCCTGGTAAACTG |
| Primer-R | AGGCTCCTTGATCCTCTGTCAT |
| Probe-1 | CTGCCAGAAGCTTAT |
| Probe-2 | TGCCAGAGGCTTAT |
| rs962458: | |
| Primer-F | ACCAAACCAATGACTTCTGGCTTTA |
| Primer-R | GTGCAGCAAGTATATGAATGAATAAACAAATCT |
| Probe-1 | TGTGCGATGTTTTC |
| Probe-2 | ATGTGCAATGTTTTC |
| rs6152: | |
| Primer-F | AGCAGCAGCGGGAGAG |
| Primer-R | GTGCCCCCTAAGTAATTGTCCTT |
| Probe-1 | CCCGAGGCTTCCCT |
| Probe-2 | CCGAGGCCTCCCT |
| rs1337080: | |
| Primer-F | TTTTTTAGGTAGAGACTCCAACATCATTACAG |
| Primer-R | CTCAACCCCACAGCATTTTATTTTCTAT |
| Probe-1 | AACTATAAATTACATATGGAAAAG |
| Probe-2 | TATAAATTACATGTGGAAAAG |
| XARx7_01: | |
| Primer-F | GGTCAGAAAACTTGGTGCTTTGT |
| Primer-R | TGATGTGGGATGAAGACAGAATGG |
| Probe-1 | CTCCTTCATGGGCATG |
| Probe-2 | TCCTTCGTGGGCATG |
| rs2781516: | |
| Primer-F | CGATGATGTTGGTTTCCTTGGAAGT |
| Primer-R | TCTGTTCTGACATGCAAATACTCTTTTCA |
| Probe-1 | CACAGAGAAATAAATAACATTAA |
| Probe-2 | CAGAGAAATAAATGACATTAA |
| rs2885913: | |
| Primer-F | GCTCATCCAGGGAACAGATATAGGA |
| Primer-R | CAGTTTCTATCTCTGGAGGACTAGCA |
| Probe-1 | TCAAAATGTGGAGTGACCA |
| Probe-2 | CAAAATGTGGAATGACCA |
| rs2363785: | |
| Primer-F | GTCTCTGGTGCCTCAGTGAAT |
| Primer-R | TCATAAACATCATGGCCTCAGCTT |
| Probe-1 | CAATTATTCAGAGCAATTC |
| Probe-2 | TTATTCCGAGCAATTC |
| rs1936313: | |
| Primer-F | CCTTTAACCAAACTCTGGAGACACA |
| Primer-R | ACCCCATGAGAACTGCAATATGTC |
| Probe-1 | CAAGCACCACTTTTACA |
| Probe-2 | CAAGCACCATTTTTACA |
Note.— Information about TaqMan “Assays on Demand” for SNPs rs12560201, rs1044165, rs708969, rs1485682, rs1385699, rs1204038, rs5919393, rs492933, rs1410127, rs1157321, rs7887862, rs1927232, rs5965536, and rs792952 was not provided by Applied Biosystems.