Table 3.

Allele Labeling

			Allele Frequency inb
SNP and Allele	Label	Amino Acida	CIDRControls	LocalControls	HWEP Valuec
rs6658788:
A	1		.511	.483
G	2		.489	.517	.58
rs1538687:
A	1		.693	.658
G	2		.307	.342	.41
rs1416962:
T	1		.648	.607
C	2		.352	.393	.44
rs946755:
T	1		.656	.620
C	2		.344	.380	.70
rs6428352:
T	1		.997	.996
C	2		.003	.004	1.00
rs800292:
A	1 = Ile		.232	.269
G	2 = Val	Ile62Val	.768	.731	.82
rs1061170:
T	1 = Tyr			.690
C	2 = His	Tyr402His		.310	.26
rs10922093:
G	1			.295
A	2			.705	.66
rs70620:
T	1		.173	.150
C	2		.827	.850	.28
rs1853883:
G	1		.511	.568
C	2		.489	.432	.45
rs1360558:
A	1		.397	.389
G	2		.603	.611	.70
rs955927:
T	1		.609	.615
A	2		.391	.385	.85
rs4350226:
A	1		.905	.897
G	2		.095	.103	.34
rs4752266:
A	1		.777	.774
G	2		.223	.226	.18
rs915394:
T	1		.813	.791
A	2		.187	.209	1.00
rs1268947:
G	1		.883	.885
C	2		.117	.115	.65
rs1537576:
G	1		.567	.581
C	2		.433	.419	.35
rs2039488:
T	1		.885	.885
C	2		.115	.115	.01
rs1467813:
T	1		.293	.295
C	2		.707	.705	.66
rs927427:
A	1		.464	.487
G	2		.536	.513	.10
rs4146894:
A	1		.466	.474
G	2		.534	.526	1.00
rs12258692:
C	1 = Pro			1.000
G	2 = Arg	Pro233Arg		.000	…
rs4405249:
T	1			.158
C	2			.842	1.00
rs1045216:
G	1 = Ala			.573
A	2 = Thr	Ala320Thr		.427	.46
rs1882907:
A	1		.813	.816
G	2		.187	.184	.76
rs10490923:
G	1 = Arg			.859
A	2 = His	His3Arg		.141	.39
rs2736911:
C	1 = Arg			.881
T	2 = Ter	Arg38Ter		.119	1.00
rs10490924:
G	1 = Ala			.807
T	2 = Ser	Ser69Ala		.193	.21
rs11538141:
A	1 = Glu			.995
G	2 = Gly	Gly54Glu		.005	1.00
rs760336:
T	1		.520	.526
C	2		.480	.474	.58
rs763720:
A	1		.212	.226
G	2		.788	.774	.79
rs1803403:
T	1 = Cys			.030
G	2 = Gly	Cys384Gly		.970	1.00

^aAmino acid change of nonsynonymous SNPs.

^bCIDR controls (n=179) and local controls (117 overlap CIDR controls).

^cHWE P value of the exact test.