Table 2.
Oligonucleotide primers used for polymerase chain reaction amplification in this study.
| Target gene | Primer | Sequence (5’ ⟶ 3’) | Annealing temperature (°C) | No. of cycles | Product size (bp) | References |
|---|---|---|---|---|---|---|
| invA | invAf | GTGAAATTATCGCCACGTTCGGGCAA | 55 | 35 | 284 | [13] |
| invAr | TCATCGCACCGTCAAAGGAACC | |||||
| aroC | aroCf | CCTGGCACCTCGCGCTATAC | 55 | 34 | 826 | [18, 20] |
| aroCr | CCACACACGGATCGTGGCG | |||||
| dnaN | dnaNf | ATGAAATTTACCGTTGAACGTGA | 55 | 34 | 833 | [18, 19] |
| dnaNr | AATTTCTCATTCGAGAGGATTGC | |||||
| hemD | hemDf | GAAGCGTTAGTGAGCCGTCTGCG | 55 | 34 | 666 | [18, 20] |
| hemDr | ATCAGCGACCTTAATATCTTGCCA | |||||
| hisD | hisDf | GAAACGTTCCATTCCGCGCAGAC | 55 | 34 | 894 | [18, 19] |
| hisDr | CTGAACGGTCATCCGTTTCTG | |||||
| purE | purEf | ATGTCTTCCCGCAATAATCC | 55 | 34 | 510 | [18, 19] |
| purEr | TCATAGCGTCCCCCGCGGATC | |||||
| sucA | sucAf | CGCGCTCAAACAGACCTAC | 55 | 34 | 643 | [18, 20] |
| sucAr | GACGTGGAAAATCGGCGCC | |||||
| thrA | thrAf | GTCACGGTGATCGATCCGGT | 55 | 34 | 852 | [18, 20] |
| thrAr | CACGATATTGATATTAGCCCG | |||||
| 16s rRNA | 16SF1 | TGTTGTGGTTAATAACCGCA | 55 | 35 | 572 | [22] |
| 16SIII | CACAAATCCATCTCTGGA |