Table 3.
Tetracycline dock results with α, β, and γ -CD.
| Tetracycline dock result with α-CD | Tetracycline dock result with β-CD | Minocycline dock result with γ -CD | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mode | Affinity | Dist from best mode | Mode | Affinity | Dist from best mode | Mode | Affinity | Dist from best mode | |||
| (kcal/mol) | rmsd l.b. | rmsd u.b. | (kcal/mol) | rmsd l.b. | rmsd u.b. | (kcal/mol) | rmsd l.b. | rmsd u.b. | |||
| 1 | − 6.3 | 0.000 | 0.000 | 1 | − 7.0 | 0.000 | 0.000 | 1 | − 7.4 | 0.000 | 0.000 |
| 2 | − 6.2 | 2.777 | 7.752 | 2 | − 6.9 | 3.134 | 7.282 | 2 | − 7.3 | 1.892 | 4.090 |
| 3 | − 5.9 | 2.104 | 4.194 | 3 | − 6.9 | 1.568 | 1.994 | 3 | − 7.0 | 3.169 | 7.253 |
| 4 | − 5.7 | 3.626 | 6.064 | 4 | − 6.7 | 3.210 | 6.978 | 4 | − 6.9 | 1.915 | 2.284 |
| 5 | − 5.7 | 3.258 | 7.713 | 5 | − 6.6 | 2.221 | 3.207 | 5 | − 6.8 | 3.021 | 7.309 |
| 6 | − 5.5 | 2.963 | 6.036 | 6 | − 6.4 | 3.092 | 5.494 | 6 | − 6.7 | 3.019 | 7.574 |
| 7 | − 5.4 | 3.520 | 6.571 | 7 | − 6.4 | 2.762 | 4.671 | 7 | − 6.6 | 3.062 | 7.369 |
| 8 | − 5.4 | 2.798 | 4.967 | 8 | − 6.2 | 3.081 | 5.202 | 8 | − 6.5 | 2.748 | 7.730 |
| 9 | − 5.0 | 4.190 | 6.611 | 9 | − 6.1 | 3.037 | 6.951 | 9 | − 6.5 | 2.791 | 7.402 |