Abstract
We report on a consanguineous family with two infertile sisters with oocyte arrest and prematurely condensed sperm chromosomes. A genome-wide linkage scan and exome sequencing revealed a homozygous variant in the gene for the thyroid receptor interacting protein 13 (TRIP13), c.518G˃A (p.Arg173Gln), affecting an evolutionary highly conserved amino acid within an ATP binding motif. Just recently, compound heterozygosity for this variant was described in a Chinese proband as pathogenic, confirming that the homozygous mutation is causative for the oocyte arrest. The TRIP13 gene and the orthologous yeast pch2 gene are, amongst others, involved in a meiotic checkpoint control. This checkpoint defect is obviously responsible for the premature condensation of the sperm chromosomes. TRIP13 and pch2 are involved in meiotic recombination. To exclude that it is involved in reciprocal somatic exchanges, we analyzed the rate of sister chromatid exchanges (SCEs) in the proband´s lymphoblastoid cells. Obviously, TRIP13 is not involved in this type of somatic recombination. Moreover, we tested whether TRIP13 can complement the defect of the yeast pch2 gene. Using a yeast deletion strain lacking pch2, we integrated plasmids containing either the yeast pch2 or the human TRIP13 gene, both harboring the wild-type or the mutant allele and assessed the crossingover rate between marker genes lys2 and leu2 as a measure of complementation. Evidence is presented that the human plasmids, unexpectedly also that with the mutation, could complement the pch2 deficient yeast strain, underlining that the evolutionary conservation at the molecular level obviously extends to the functional level.
Supplementary Information
The online version contains supplementary material available at 10.1186/s13039-025-00722-7.
Keywords: Human TRIP13, Yeast pch2, Oocyte arrest, Premature chromosome condensation, Sister chromatid exchanges, Complementation study
Introduction
Since the introduction of in vitro fertilisation (IVF) in 1978 and later of the intracytoplasmic sperm injection (ICSI) technique, more than 10 million children in the United States have been conceived via these assisted reproductive technologies [4, 39, 49]. In parallel, there is an increase of cytological and molecular genetic studies in cases of fertilization failure and early embryo arrest ([15, 20, 48]. To the best of our knowledge, the first probands with oocyte maturation arrest after IVF were published in 1986 [44]. The oocytes showed no pronuclei, but prematurely condensed sperm chromosomes of the G1-phase besides the haploid set of maternal metaphase II chromosomes. This phenomenon of premature chromosome condensation (PCC, [21]) could be explained by the arrest of the oocyte chromosomes at metaphase II after sperm penetration and the continuing presence of the active maturation promoting factor (MPF) leading to the induction of prematurely condensed sperm chromosomes [22, 24]. Experimentally, this phenomenon has been induced by injection of isolated plant nuclei into maturing Xenopus oocytes, illustrating that such fundamental biological processes like chromosome condensation in mitosis and meiosis, which are not different in animal and plant kingdom from a morphological point of view, are also very similar with respect to the underlying regulatory control [36, 53]. Recent advances in molecular genetics have greatly enhanced research into the genetic causes of oocyte/zygote/embryo maturation arrest (OZEMA), leading to the identification of more than 20 disease genes [34, 58].
In 2002, two sisters from consanguineous parents were reported, who underwent unsuccessful IVF treatment. Their fertilized oocytes showed no pronuclei and prematurely condensed sperm chromosomes. They had two sisters with two and four children and two married brothers without offspring. This constellation pointed to an autosomal recessive trait responsible for the oocyte arrest [45]. Based on this family, we performed homozygosity mapping with microsatellites and next generation sequencing to identify the underlying gene defect, the results of which we report here.
Materials and methods
Subjects
After informed consent, peripheral blood was obtained from the consanguineous parents and five of their six offspring. All had a normal female or male karyotype. Two female offspring underwent unsuccessful IVF treatments, two other sisters had delivered children, both brothers were married without children. Lymphoblastoid cell lines were established from the mother, the four sisters and one brother as described previously [33].
Genetic analysis
Microsatellite mapping
Genetic linkage analysis with microsatellites was carried out on DNA of both parents and five of the six offspring (except one male offspring) by standard semi-automated methods using ABI Prism 377 (Applied Biosystems) and MegaBACE 1000 (Amersham Pharmacia Biotech) sequence detection systems as described before [18]. In short: The genome-wide scan included 382 polymorphic markers labeled with fluorescein and spaced at intervals of about 10 cM throughout the genome. Additional microsatellite markers were used for fine mapping. Linkage analysis was performed assuming autosomal recessive inheritance, full penetrance and a disease gene frequency of 0.0001. Multipoint lod scores were generated with GENEHUNTER, version 1.3 [26], and reconstructed haplotypes with GENEHUNTER by hand.
Next generation sequencing and mutation detection
Next generation sequencing was performed with the SOLiD technology (Applied Biosystem). The raw data were mapped to the haploid human reference sequence hg18 and variants were called using the platform’s standard software pipelines [41]. Called variants were filtered to exclude variants not found in all affected persons as well as common variants identified in the dbSNP130 or HapMap databases and characterized by PolyPhen-2 [1] and Mutation Taster [46].
Mutation screening in candidate genes was performed by bidirectional sequencing of PCR products using BigDye Terminator chemistry on an ABI 3730 sequencer. Detection of variants was performed with the GS Reference Mapper Version 2.0.0.12 (Roche). Only the HCDiff (high confidence differences) of the GS Mapper software were used as basis of variant detection. As additional quality criteria we used only variants with a coverage > 10 × of high-quality reads [50].
Exome sequencing of both affected probands (II.1, II.2) and their healthy sister (II.6) was performed on an Illumina NovaSeq 6000 sequencer using the Twist Human Core Exome Enrichment Technology (Twist Bioscience Inc.) and processed as previously described [7]. In total, 443 genes associated either with HPO terms “female infertility” (HP:0008222) or “infertility” (HP:0000789), “familial cancer” or “increased SCE rate” were evaluated. This latter category included ATM [3], BLM & WRN ([31]; [5, 32]), BRCA1, BRCA2, RAD51 & POLQ [14, 16], FANCA [35], TP53 [42, 51] genes. Variants were analyzed regarding their occurrence and frequencies in population or variant databases, their segregation and their consequences as well as regarding their plausibility in light of the phenotype.
Sister chromatid exchange (SCE) analysis
SCE rates were assessed in lymphoblastoid cultures which were grown in medium containing 5-bromo-2-deoxy-uridine for 72 h and kept in the dark. Colcemid (0.1 μg/ml) was added to each culture two hours before the end of incubation. The cells were transferred to slides and air-dried chromosome preparations were made. Slides were stained with Giemsa and scored blindly by the same reader. Fifty well differentiated diploid second division metaphases were scored of each subject [37].
Yeast complementation assay
The complementation analysis between the human TRIP13 and the yeast pch2 gene is based on the yeast BY4743 deletion strain without the pch2 gene, kindly provided by EUROSCARF. For methodical details see [13]. As measure of complementation the crossingover rate between the marker genes lys2 and leu2 was used. The BY4743 strain was heterozygous for the lys2 gene (lys2+,lys2−) and transformed with two variants of the leu2 gene (leu2+,leu2−). The genetic distance between the leu2 and lys2 genes was approx. 30 cM.
Thereafter, this strain (Y33326) was complemented with plasmid p416GPD [47] containing the human TRIP13 gene with the wild-type (TRIP13wt) or the mutant allele c.518G˃A (TRIP13mut). As control served the Y33326 strain complemented with the yeast pch2 gene with and without intron (pch2wti; pch2wt) or with a deletion (pch2 Δ). As further control served the wild type strain with the pch2 gene (Y20000) and also this strain transformed with the empty p416GPD vector (wt). Transformation was confirmed by Sanger sequencing and PCR of the vectors and the leu2 cassette.
For the generation of the construct p416GPD-TRIP13, a DNA fragment encoding the full-length TRIP13 was amplified via PCR from the cDNA WI38 (ATCC®CCL-75.1) by using the oligonucleotides TRIP13_BamHI (TTACGCGGATCCATGGACGAGGCCGTG) and TRIP13_XhoI (CCGCTCGAGTCAGATGTAAGCTGCAAGC). The resultant DNA fragment was treated with the restriction enzymes BamHI and XhoI and ligated into the BanHI/XhoI sites of the yeast vector p426GPD. Underlined primer sequences represent the restriction sites.
The quick-change XL site directed mutagenesis kit was used to create the mutant p426GPD-TRIP13_R173Q by using the mutagenesis-primer TRIP13_R173Q_FW (CATCACCTGGAACCAGGTGGTGCTGCTCC) and TRIP13_R173Q_RV (GGAGGCAGCACCACCTGGTTCCAGGTGATG) respective to the manufacturing protocol. All generated constructs were validated by Sanger sequencing.
To calculate the crossingover rate, the various strains were stimulated to sporulate. The spores were then plated on agar plates and the resulting colonies were replica plated on leucine dropout, lysine dropout and complete medium plates. Thus, the four possible genotypes, which were either prototrophic ( +) or auxotrophic (−), could be distinguished: lys+ leu+, lys− leu−, lys+ leu− and lys− leu+. The first two combinations corresponded to the original allele arrangement, the latter two are the result of meiotic recombination and reflect the crossingover rate. Based on this, the genetic distance in cM has been calculated by the mapping function of Kosambi [25].
Statistics
Statistical analyses were carried out with Fisher´s exact test (two-tailed) and the Mann–Whitney U-Test (two-tailed).
Results and discussion
The analysis was based on consanguineous parents with six children: Two childless married brothers, two sisters with two resp. four offspring, and two sisters who underwent unsuccessful IVF treatments (Fig. 1). After IVF their oocytes showed neither a first or second polar body nor a pronucleus, but maternal metaphase I chromosomes and prematurely condensed sperm chromosomes of the G1-phase. Both women exhibited a normal female karyotype [45]. This was a strong indication of an autosomal recessive gene defect leading to the oocyte arrest.
Fig. 1.
Pedigree of a consanguineous family (parents are first cousins) with two sisters with oocyte arrest (black circles), two sisters (II.5, II.6) with two and four children each and two childless married brothers (grey boxes). The oocytes of II.1 and II.2 were arrested at MI and showed prematurely condensed sperm chromosomes [45]. The affected sisters are homozygous (A/A) for the TRIP13 missense variant (c.518G˃A) resulting in the replacement of arginine by glutamine (p.Arg173Gln). One sister (II.6) is homozygous for the wild type allele (G/G). The missense variant maps to the large AAA + ATPase domain (Ye et al. 2017)
We carried out a genome-wide linkage scan based on 382 microsatellites evenly spaced throughout the genome. The analysis revealed five regions with homozygous markers, with only one marker on chromosomes 1 and 3 and two neighboring markers on chromosomes 5, 6 and 18 (Table 1). The most likely candidate region was the distal part of chromosome 5q with a maximal length of 21.4 cM. Two markers had produced the almost highest possible LOD score, based on the model of two affected and two unaffected sisters and heterozygote parents.
Table 1.
Linkage analysis with microsatellite markers
| chromo- some |
marker | position cM |
LOD score | candidate gene | map position |
|---|---|---|---|---|---|
| 1 | D1S419 | 237.2 | − 1.99 | ||
| D1S251 | 249 | 1.738 | PPP1R15B | 204,403,381–204,411,817 | |
| D1S235 | 258.7 | − 2 | |||
| 3 | D3S1262 | 207.2 | − 99.9 | none | |
| D3S3663 | 220.3 | 0.931 | |||
| D3S1265 | 228 | − 99.9 | |||
| 5 | D5S2005 | 0 | 1.356 | CCDC127 | 196,868–218,153 |
| D5S406 | 10.7 | 1.153 | TRIP13 | 892,884–918,120 | |
| D5S667 | 21.4 | − 99.9 | ADAMTS16 | 5,140,330–5,320,304 | |
| 6 | D6S344 | 1.4 | − 99.9 | ||
| D6S309 | 13.6 | 0.551 | HIST1H2BA | 25,726,909–25,727,292 | |
| D6S422 | 35.7 | 0.997 | |||
| D6S276 | 44.9 | − 99.9 | |||
| 18 | D18S59 | 0.1 | 1.357 | none | |
| D18S63 | 7.9 | 0.426 | |||
| D18S452 | 17.7 | − 99.9 | |||
Results of multipoint linkage analysis of seven members (excluding individual II.4) of the consanguineous family with oocyte arrest. Based on the analysis with 382 microsatellite markers five candidate regions could be identified and five candidate genes with homozygous variants identified. The physical position of the flanking markers and of the candidate genes refer to the Ensembl database, GRCh38).
After exome sequencing six genes with homozygous variants could be identified within the five candidate regions (Table 1). However, only two genes, CCDC127 and TRIP13, on chromosome 5q showed potential pathogenic variants, based on the analysis with MutationTaster and PolyPhen-2. The variant c.256G˃A (p.Ala86Thr) of the CCDC127 gene was not conserved. In contrast, the variant in the Thyroid receptor interacting protein 13 (TRIP13) gene, c.518G˃A (p.Arg173Gln), affects an evolutionary highly conserved position of an ATP binding motif (Fig. 1, Suppl. Figure 1a, b). There is high conservation of TRIP13 orthologs among all eukaryotes, including yeast pch2 [8].
The mutant mouse trip13 gene results, amongst others, in meiotic arrest at pachytene [10, 28, 54]. Just recently, 11 TRIP13 pathogenic missense variants and one splice variant were identified in probands with oocyte maturation arrest [9, 19, 30, 57]. One of them with oocyte MI arrest was compound heterozygous for the same TRIP13 mutation as identified here. Thus, the homozygous variant in the probands can be considered as causative for the oocyte arrest at metaphase I.
It should be added that homozygous TRIP13 truncating variants cause a completely different phenotype: mosaic variegated aneuploidy syndrome-3 (MVA3), characterized by chromosomal instability and early-onset Wilms tumor [55]. Moreover, amplification of TRIP13 has been observed in various human cancers with chromosome instability, presumably due to its key role in mitotic processes, such as the spindle assembly checkpoint and DNA repair pathways [29]. The individuals with oocyte arrest and TRIP13 missense variants including these probands, manifest only infertility without any other abnormality, including Wilms tumor.
The repair of sister chromatid exchanges (SCEs) is utilized during meiosis but difficult to assess [6]. SCEs can easily be identified in mitotic cells and are involved in DNA repair processes, such as homologous recombination [16]. Their frequency is increased after exposure to genotoxic agents and in case of pathological conditions such as Bloom syndrome [12] or Behçcet´s disease [23]. To exclude that TRIP13 is involved in this type of reciprocal exchanges, we analyzed the SCE-rate in the proband´s lymphoblastoid cells.
In comparison with the control there was a significant increase of the SCE rate in the affected proband II.1 (inset Fig. 2), but not in her affected sister II.2 or the heterozygote family members (Fig. 2, Suppl. Table 1). At the time of blood sampling the probands showed no signs of a viral infection and did not report any exposure to chemicals or taking drugs. Therefore, exome sequencing of both affected probands (II.1, II.2) and their healthy sister (II.6) was performed to look for a genetic disposition. In total, 443 genes associated either with infertility, familial cancer or increased SCE rate were evaluated. The observed variants were analysed regarding their occurrence and frequencies in population or variant databases, their segregation and their consequences as well as regarding their plausibility in light of the phenotype. In the healthy sister (II.6) and the affected sister with a normal SCE-rate (II.2) no relevant variants were detected, except the homozygous TRP13 mutation in the latter (Suppl. Table 2). The affected sister with an increased SCE-rate (II.1) had a variant of the NR5A1 gene (chr9:124493082C > A, exon 5: c.938G > A (p.Arg313His) in 20% of the reads. Therefore, mosaicism as a result of a mutation in the lymphoblastoid cell line cannot be excluded. The two sisters, II.2 and II.6 were homozygous for the wild-type allele. Thus, an influence of this heterozygote variant on the SCE-rate is highly unlikely.
Fig. 2.
Distribution of the number of sister chromatid exchanges/cell in lymphoblastoid cells of five family members (II.1 and II.2 with oocyte arrest) and a control. The difference to the control was calculated with the Mann–Whitney U-Test, two-tailed. Inset: Metaphase of II.1 with high SCE rate
In addition, the RNF212 gene is homozygous for a Deletion-Insertion variant in exon 4: c.720_721delinsGGCTGGCTCCAGCCTGGGCAG; p.R240_S241delinsGWLQPGQ. This variant was classified as “likely benign”. RNF212 encodes a RING finger protein that is involved in meiotic recombination [38]. A homozygous RNF212 variant, c.111dupT, resulted in nonobstructive azoospermia due to complete metaphase arrest at the spermatocyte stage [40]. Thus, an influence of this variant on the SCE rate is rather unlikely but cannot be ruled out in principle and only be clarified by further investigations. Altogether, we have no explanation for the higher SCE rate in II.1. The normal values of the other affected sister II.2 underline that this is obviously not related to the TRIP13 pathogenic variant. Obviously, recombination mechanisms leading to meiotic crossingovers and somatic SCEs are regulated differently [52].
Moreover, we tested whether the human TRIP13 can complement a deficiency of the orthologous yeast pch2 gene. Based on the Needleman-Wunsch global alignment algorithm [2] the identity of the TRIP13 and pch2 gene is 47% at the cDNA and 26% at the amino acid level. Arginine is highly conserved at position 173, but not in the relevant domain of the yeast pch2 gene (Fig. 3). Based on the AlphaFold protein structure this region maps to a less regular and more open conformation (Suppl. Figure 2).
Fig. 3.

Evolutionary conservation in orthologues of selected species of the amino acid sequence flanking arginine (R) at position 173 of the human TRIP13 gene. The yeast (Pch2) amino acid sequence is based on the Needleman-Wunsch alignment (Altschul 1997) with the human TRIP13 protein
Both genes are involved in meiotic recombination. Therefore, the crossingover rate between the marker genes lys2 and leu2 was used as measure of complementation in the yeast Y33326 deletion strain, which contains no pch2 gene. This strain was heterozygous for the lys2 gene (lys2+,lys2−) and transformed with two variants of the leu2 gene (leu2+,leu2−). The genetic distance between the leu2 and lys2 genes is approx. 30 cM. This strain served as one control (Y33326). Thereafter, this strain was complemented with plasmid p416GPD containing the human TRIP13 gene with the wild-type (TRIP13wt) or the mutant allele c.518G˃A (TRIP13mut). As control, we used the complementation with the yeast pch2 gene with and without intron (pch2wti; pch2wt) or with the deletion mutant (pch2Δ). The wild type strain (Y20000) with the pch2 gene and also transformed with the empty p416GPD vector (wt) was used as an additional positive control. Transformation was confirmed by Sanger sequencing and PCR of the vectors and the leu2 cassette (Fig. 4). The different yeast strains are summarized once again in Table 2.
Fig. 4.
Confirmation of successful transformation of the yeast deletion strain Y33326 with the various plasmids (A) or the leu2 cassette (B). Total DNA was extracted from the various strains, the plasmids (with the genes) amplified, the PCR products separated on agarose gels and identified by UV light. The length of the bands (M) is given in kb. Wt: wild type strain Y20000 with the pch2 gene and the empty p416GPD vector. pch2Δ: deletion strain Y33326 without the pch2 gene, with the TRIP13 wild type gene (T13wt) or its mutant allele c.518G˃A (T13m), with the pch2 gene (pch2) and the pch2 gene plus intron (pch2i). Y20: wild type strain Y20000; Y33 deletion strain Y33326
Table 2.
Brief characterization of the various yeast stains
| Strain | Symbol | |
|---|---|---|
| 1 | Yeast wild type stain | Y2000 |
| 2 | ⁄ ⁄ + empty vector | wt |
| 3 | Yeast deletion strain without the pch2 gene | Y33326 |
| 4 | ⁄ ⁄ + vector with human TRIP13 gene (wild type) | TRIP13wt |
| 5 | ⁄ ⁄ + vector with human TRIP13 gene (mutated) | TRIP13mut |
| 6 | ⁄ ⁄ + vector with yeast pch2 gene | pch2 |
| 7 | ⁄ ⁄ + vector with yeast pch2 gene + intron | pch2i |
| 8 | ⁄ ⁄ + vector with yeast pch2 gene with deletion | pch2Δ |
To calculate the crossingover rate, the various strains were stimulated to sporulate. The spores were then plated on agar plates and the resulting colonies were replica plated on leucine dropout, lysine dropout and complete medium plates. Thus, the four possible genotypes, which were either prototrophic ( +) or auxotrophic (−), could be distinguished: lys+ leu+, lys− leu−, lys+ leu− and lys− leu+. The first two combinations corresponded to the original allele arrangement, the latter two are the result of meiotic recombination and reflect the crossingover rate (Table 3). The results illustrate that the recombination rates of the various strains containing the yeast pch2 gene are very similar between 26.3 and 28.8%, corresponding to a genetic distance between lys2 and leu2 of 29–32 cM.
Table 3.
Analysis of the crossingover rate between the various yeast strains. Random spore analysis (number of colonies) to calculate the crossingover rate between the lys2 and leu2 genes of the various yeast strains. P1 and P2 represent the original allele arrangement, R1 and R2 the recombinants. RF = fraction of recombinants in %. The genetic distance (cM) has been calculated by the mapping function of Kosambi [25]. Y20000: wild type strain with all yeast genes, including pch2; Y33326: deletion strain without the pch2 gene. Wt: wild-type strain Y20000 with the pch2 gene and the empty p416GPD vector. Pch2: deletion strain Y33326 with the pch2 gene and with the pch2 gene plus intron (pch2i) and without the pch2 gene (pch2Δ). The deletion strain Y33326 with the TRIP13 wild type gene (TRIP13wt) or its mutant allele c.518G˃A (TRIP13mut)
| strain | Colonies | P1 lys+ leu+ |
P2 lys− leu− |
R1 lys+ leu− |
R2 lys− leu+ |
RF % | Distance (cM) | P value # | crossing-over rate |
|---|---|---|---|---|---|---|---|---|---|
| Y20000 | 216 | 71 | 87 | 26 | 32 | 26,9 | 30.0 | – | normal |
| Y33326 | 229 | 81 | 54 | 45 | 49 | 41,0 | 57.99 | 0.03 | ⁎ |
| wt | 642 | 197 | 262 | 90 | 93 | 28.5 | 32.38 | 0.81 | normal |
| pch2 | 640 | 231 | 241 | 72 | 96 | 26.3 | 29.16 | 0.90 | normal |
| pch2i | 618 | 233 | 210 | 91 | 84 | 28.3 | 32.11 | 0.80 | normal |
| pch2Δ | 603 | 137 | 219 | 108 | 139 | 41.0 | 57.72 | 0.01 | ⁎ |
| TRIP13wt | 317 | 113 | 73 | 64 | 67 | 41.3 | 58.83 | 0.02 | ⁎ |
| TRIP13mut | 671 | 305 | 193 | 84 | 89 | 25.8 | 28.52 | 0.90 | normal |
#comparison with control strain Y20000 (Fisher´s exact test, two-tailed); ⁎ significant increase of the recombination frequency (crossingover rate)
For the statistical analysis, the mean values of the spore colonies with the original arrangement of the alleles (P1/P2) and the recombinants (R1/R2) were compared between the wild type strain Y2000 and the other constructs (Table 3). The strains without the pch2 gene showed a significant increase in the crossingover rate, which is characteristic for pch2 mutants [56].
The results with the TRIP13 gene were rather unexpected: the mutant was able to complement the defective yeast gene, but not the TRIP13 wild-type gene. Moreover, the TRIP13 findings differ from the other complementation studies in another respect. Theoretically, the ratio of P1–P2 and R1–R2 should be 1:1. This is true for the revertant in all cases, but with regard to the TRIP13 findings, the number of P1 spore colonies was significantly higher than the P2 ones (Table 3, Suppl. Table 3). Apparently, the spores can grow better on the prototrophic medium (Lys+ Leu+) than on the auxotrophic medium (Lys− Leu−). If one assumes that the higher P1 value reflects the situation more adequately than the P2 or the average value, the difference to the control for the construct with the TRIP13 wild-type gene is no longer significant (p = 0.09, Suppl. Table 4).
Based on the observation that the codon usage between human and yeast is different, codon usage in yeast spores is not optimal for vectors with human cDNA [13]. Consequently, expression of the human TRIP13 protein is reduced, which might affect the spore growth on auxotrophic medium. The sequence alignment (Fig. 3) illustrates that no equivalent yeast amino acid exists at position 173 of the human TRIP13 protein. Thus, one cannot exclude that TRIP13 with the mutant glutamine at this position can complement Pch2 slightly better than TRIP13 with arginine. Apart from this, our results provide compelling evidence that the human TRIP13 protein can complement the crossingover defect in pch2 deficient yeast strains.
This is not unexpected as we had earlier shown that the sterol reductase deficiency in yeast with an ERG24 mutation could be rescued by the human wildtype LBR gene [11] and the deletion of the xrs2 gene in yeast complemented by the human NBN gene, but only with codon optimized cDNA [13]. Altogether, most of the human housekeeping genes, including those involved in mitosis and meiosis, are evolutionary conserved and even possess orthologs in unicellular plants and fungi, such as Saccharomyces cerevisiae [27]. Interestingly, a study in yeast has shown that genes involved in meiosis are characterized by positive selection and consequently more rapid evolution [43]. This might explain the rather low sequence similarity between human TRIP13 and yeast pch2.
Conclusion
The clinical effect, infertility, of the homozygous TRIP13 missense variant described here, is obviously limited to meiosis. This is quite remarkable if one considers, in how many tissues the gene is expressed, how diverse the clinical manifestations of TRIP13 pathogenic variants in animals are [28] and the important role its somatic mutations play in cancerogenesis [29, 55]. On the other hand, there are many examples in which the clinical manifestation of different allelic variants can even range from mild to lethal, e.g. in the case of mutations in the LBR gene [11, 18], which shows similarly high evolutionary conservation as TRIP13 and is also involved in meiotic checkpoint control [8, 17, 28]. In the present case, the oocytes are arrested in the first meiotic metaphase. The prematurely condensed sperm chromosomes indicate that this defective checkpoint is responsible for this phenomenon. There is no evidence that this is reversible and therefore all approaches to correct the oocyte arrest must be performed before fertilization [57].
Supplementary Information
Acknowledgements
We are much obliged to the family for their participation. We thank Axel Fischer for bioinformatic support, Melanie Isau for experimental assistance and Britta Teubner for technical assistance. This paper is dedicated to the memory of Hardi Schmiady (1950-2011) in recognition of his contribution to the initiation of this project.
Author contributions
Conceived and designed the experiments: M.S., C.J., A.R., K.S. and H.N.. Performed the experiments: M.S., E.G., A.K., A.R. and H.N. Analysed the data: M.S., A.R., A.R., K.S. and H.N. Contributed the clinical data: D.H. The first draft of the manuscript was written by K.S. and H.N.. All authors read and approved the final manuscript.
Funding
Open Access funding enabled and organized by Projekt DEAL. This work was supported by the Bundesministerium für Forschung und Technologie and the German Human Genome Project to André Reis and by the Charité-Universitätsmedizin Berlin to Heidemarie Neitzel.
Availability of data and materials
The data that support the findings of this study are available in this article. The additional data sets generated (i.e. Solid sequencing, Microsatellite analysis, Exome sequencing) are available from the corresponding author on reasonable request.
Declarations
Ethics approval and consent to participate
This study was performed according to the Declaration of Helsinki principles of medical research involving human subjects and was approved by institutional Ethics Committees of the Charité-Universitätsmedizin Berlin.
Consent for publication
Not applicable.
Competing interests
The authors declare no competing interests.
Footnotes
Publisher's Note
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References
- 1.Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR. A method and server for predicting damaging missense mutations. Nat Methods. 2010;7:248–9. 10.1038/nmeth0410-248. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 2.Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25:3389–402. 10.1093/nar/25.17.3389. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Balmus G, Pilger D, Coates J, et al. ATM orchestrates the DNA-damage response to counter toxic non-homologous end-joining at broken replication forks. Nat Commun. 2019;10:87. 10.1038/s41467-018-07729-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Beilby KH, Kneebone E, Roseboom TJ, van Marrewijk IM, Thompson JG, Norman RJ, Robker RL, Mol BWJ, Wang R. Offspring physiology following the use of IVM, IVF and ICSI: a systematic review and meta-analysis of animal studies. Hum Reprod Update. 2023;29:272–90. 10.1093/humupd/dmac043. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Ben Salah G, Hadj Salem I, Masmoudi A, Kallabi F, Turki H, Fakhfakh F, Ayadi H, Kamoun H. A novel frameshift mutation in BLM gene associated with high sister chromatid exchanges (SCE) in heterozygous family members. Mol Biol Rep. 2014;41:7373–80. 10.1007/s11033-014-3624-5. [DOI] [PubMed] [Google Scholar]
- 6.Billmyre KK, Hughes SE. Meiosis: the elusive sister chromatid repair. Curr Biol. 2021;31:R454–6. 10.1016/j.cub.2021.03.093. [DOI] [PubMed] [Google Scholar]
- 7.Bosch E, Hebebrand M, Popp B, Penger T, Behring B, Cox H, et al. BDV syndrome: an emerging syndrome with profound obesity and neurodevelopmental delay resembling Prader-Willi syndrome. J Clin Endocrinol Metab. 2021;106:3413–27. 10.1210/clinem/dgab592. [DOI] [PubMed] [Google Scholar]
- 8.Cardoso da Silva R, Vader G. Getting there: understanding the chromosomal recruitment of the AAA+ ATPase Pch2/TRIP13 during meiosis. Curr Genet. 2021;67:553–65. 10.1007/s00294-021-01166-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Chen J, Liu Y, Wu X, Zhang Y, Huang W, Han W, Chen G, Xu Q, Chen H, Wu Q, Wang J, Huang J. Identification of a novel splicing variant of thyroid hormone receptor interaction protein 13 (TRIP13) in female infertility characterized by oocyte maturation arrest. J Assist Reprod Genet. 2024;41:2777–85. 10.1007/s10815-024-03219-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Chotiner JY, Leu NA, Yang F, Cossu IG, Guan Y, Lin H, Wang PJ (2023) TRIP13 localizes to synapsed chromosomes and functions as a dosage-sensitive regulator of meiosis. bioRxiv [Preprint] Dec 15:2023.09.25.559355. 10.1101/2023.09.25.559355 [DOI] [PMC free article] [PubMed]
- 11.Clayton P, Fischer B, Mann A, Mansour S, Rossier E, Veen M, Lang C, Baasanjav S, Kieslich M, Brossuleit K, Gravemann S, Schnipper N, Karbasyian M, Demuth I, Zwerger M, Vaya A, Utermann G, Mundlos S, Stricker S, Sperling K, Hoffmann K. Mutations causing Greenberg dysplasia but not Pelger anomaly uncouple enzymatic from structural functions of a nuclear membrane protein. Nucleus (Paris). 2010;1:354–66. 10.4161/nucl.1.4.12435. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.Cunniff C, Bassetti JA, Ellis NA. Bloom’s syndrome: clinical spectrum, molecular pathogenesis, and cancer predisposition. Mol Syndromol. 2017;8:4–23. 10.1159/000452082. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Demuth I, Krebs SK, Dutrannoy V, Linke C, Krobitsch S, Varon R, Lang C, Raab A, Sperling K, Digweed M. Yeast XRS2 and human NBN gene: experimental evidence for homology using codon optimized cDNA. PLoS ONE. 2018;13: e0207315. 10.1371/journal.pone.0207315. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.De Pascalis I, Pilato B, Mazzotta A, Dell’Endice TS, Rubini V, Simone G, Mangia A. Sister chromatid exchange: a possible approach to characterize familial breast cancer patients. Oncol Rep. 2015;33:930–4. 10.3892/or.2014.3628. [DOI] [PubMed] [Google Scholar]
- 15.Hatırnaz Ş, Hatırnaz ES, Ellibeş Kaya A, Hatırnaz K, Soyer Çalışkan C, Sezer Ö, Dokuzeylül Güngor N, Demirel C, Baltacı V, Tan S, Dahan M. Oocyte maturation abnormalities - A systematic review of the evidence and mechanisms in a rare but difficult to manage fertility pheneomina. Turk J Obstet Gynecol. 2022;19:60–80. 10.4274/tjod.galenos.2022.76329. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Heijink AM, Stok C, Porubsky D, Manolika EM, de Kanter JK, Kok YP, Everts M, de Boer HR, Audrey A, Bakker FJ, Wierenga E, Tijsterman M, Guryev V, Spierings DCJ, Knipscheer P, van Boxtel R, Ray Chaudhuri A, Lansdorp PM, van Vugt MATM. Sister chromatid exchanges induced by perturbed replication can form independently of BRCA1, BRCA2 and RAD51. Nat Commun. 2022;13:6722. 10.1038/s41467-022-34519-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Herruzo E, Lago-Maciel A, Baztán S, Santos B, Carballo JA, San-Segundo PA. Pch2 orchestrates the meiotic recombination checkpoint from the cytoplasm. PLoS Genet. 2021;17: e1009560. 10.1371/journal.pgen.1009560. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Hoffmann K, Dreger CK, Olins AL, Olins DE, Shultz LD, Lucke B, Karl H, Kaps R, Müller D, Vayá A, Aznar J, Ware RE, Sotelo Cruz N, Lindner TH, Herrmann H, Reis A, Sperling K. Mutations in the gene encoding the lamin B receptor produce an altered nuclear morphology in granulocytes (Pelger-Huët anomaly). Nat Genet. 2002;31:410–4. 10.1038/ng925. [DOI] [PubMed] [Google Scholar]
- 19.Hu H, Zhang S, Guo J, Meng F, Chen X, Gong F, Lu G, Zheng W, Lin G. Identification of novel variants of thyroid hormone receptor interaction protein 13 that cause female infertility characterized by zygotic cleavage failure. Front Physiol. 2022;13: 899149. 10.3389/fphys.2022.899149. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Huo M, Zhang Y, Shi S, Shi H, Liu Y, Zhang L, Wang Y, Niu W. Gene spectrum and clinical traits of nine patients with oocyte maturation arrest. Front Genet. 2022;13: 772143. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Johnson RT, Rao PN. Mammalian cell fusion: induction of premature chromosome condensation in interphase nuclei. Nature. 1970;226:717–22. 10.1038/226717a0. [DOI] [PubMed] [Google Scholar]
- 22.Jones KT. Turning it on and off: M-phase promoting factor during meiotic maturation and fertilization. Mol Hum Reprod. 2004;10:1–5. 10.1093/molehr/gah009. [DOI] [PubMed] [Google Scholar]
- 23.Karaman A, Kadi M, Kara F. Sister chromatid exchange and micronucleus studies in patients with Behçet’s disease. J Cutan Pathol. 2009;36:831–7. 10.1111/j.1600-0560.2008.01180.x. [DOI] [PubMed] [Google Scholar]
- 24.Kawahara M, Wakai T, Yamanaka K, Kobayashi J, Sugimura S, Shimizu T, Matsumoto H, Kim JH, Sasada H, Sato E. Caffeine promotes premature chromosome condensation formation and in vitro development in porcine reconstructed embryos via a high level of maturation promoting factor activity during nuclear transfer. Reproduction. 2005;130:351–7. 10.1530/rep.1.00644. [DOI] [PubMed] [Google Scholar]
- 25.Kosambi DD. The estimation of map distances from recombination values. Ann Eugen. 1943;12:172–5. 10.1111/j.1469-1809.1943.tb02321.x. [Google Scholar]
- 26.Kruglyak L, Daly MJ, Reeve-Daly MP, Lander ES. Parametric and nonparametric linkage analysis: a unified multipoint approach. Am J Hum Genet. 1996;58:1347–63 (PMID: 8651312). [PMC free article] [PubMed] [Google Scholar]
- 27.Lee CE, Singleton KS, Wallin M, Faundez V. Rare genetic diseases: nature’s experiments on human development. iScience. 2020;23: 101123. 10.1016/j.isci.2020.101123. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Li XC, Schimenti JC. Mouse pachytene checkpoint 2 (trip13) is required for completing meiotic recombination but not synapsis. PLoS Genet. 2007;3: e130. 10.1371/journal.pgen.0030130. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29.Lu S, Qian J, Guo M, Gu C, Yang Y. Insights into a crucial role of TRIP13 in human cancer. Comput Struct Biotechnol J. 2019;17:854–61. 10.1016/j.csbj.2019.06.005. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Lv XJ, Guo J, Lin G. Novel mutations in TRIP13 lead to female infertility with oocyte maturation arrest. Yi Chuan. 2023;45:514–25. 10.16288/j.yczz.23-022. [DOI] [PubMed] [Google Scholar]
- 31.Mendez-Bermudez A, Hidalgo-Bravo A, Cotton VE, Gravani A, Jeyapalan JN, Royle NJ. The roles of WRN and BLM recQ helicases in the alternative lengthening of telomeres. Nucleic Acids Res. 2012;40:10809–20. 10.1093/nar/gks862. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.Mukherjee S, Sinha D, Bhattacharya S, Srinivasan K, Abdisalaam S, Asaithamby A. Werner syndrome protein and DNA replication. Int J Mol Sci. 2018;19: 3442. 10.3390/ijms19113442. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Neitzel H. A routine method for the establishment of permanent growing lymphoblastoid cell lines. Hum Genet. 1986;73:320–6. 10.1007/BF00279094. [DOI] [PubMed] [Google Scholar]
- 34.OMIM (2023): OZEMA1 - OZEMA21. https://www.omim.org
- 35.Palovcak A, Liu W, Yuan F, Zhang Y. Maintenance of genome stability by Fanconi anemia proteins. Cell Biosci. 2017;7:8. 10.1186/s13578-016-0134-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Pei Z, Deng K, Xu C, Zhang S. The molecular regulatory mechanisms of meiotic arrest and resumption in oocyte development and maturation. Reprod Biol Endocrinol. 2023;21:90. 10.1186/s12958-023-01143-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Perry P, Wolff S. New Giemsa method for the differential staining of sister chromatids. Nature. 1974;251:156–8. 10.1038/251156a0. [DOI] [PubMed] [Google Scholar]
- 38.Reynolds A, Qiao H, Yang Y, Chen JK, Jackson N, Biswas K, Holloway JK, Baudat F, de Massy B, Wang J, Höög C, Cohen PE, Hunter N. RNF212 is a dosage-sensitive regulator of crossing-over during mammalian meiosis. Nat Genet. 2013;45:269–78. 10.1038/ng.2541. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Ribeiro S, Sousa M. In vitro fertilisation and intracytoplasmic sperm injection predictive factors: a review of the effect of female age, ovarian reserve, male age, and male factor on IVF/ICSI treatment outcomes. JBRA Assist Reprod. 2023;27:97–111. 10.5935/1518-0557.20220000. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40.Riera-Escamilla A, Enguita-Marruedo A, Moreno-Mendoza D, Chianese C, Sleddens-Linkels E, Contini E, Benelli M, Natali A, Colpi GM, Ruiz-Castañé E, Maggi M, Baarends WM, Krausz C. Sequencing of a “mouse azoospermia” gene panel in azoospermic men: identification of RNF212 and STAG3 mutations as novel genetic causes of meiotic arrest. Hum Reprod. 2019;34:978–88. 10.1093/humrep/dez042. [DOI] [PubMed] [Google Scholar]
- 41.Rödelsperger C, Krawitz P, Bauer S, Hecht J, Bigham AW, Bamshad M, de Condor BJ, Schweiger MR, Robinson PN. Identity-by-descent filtering of exome sequence data for disease-gene identification in autosomal recessive disorders. Bioinformatics. 2011;27:829–36. 10.1093/bioinformatics/btr022. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42.Roy S, Tomaszowski KH, Luzwick JW, Park S, Li J, Murphy M, Schlacher K. p53 orchestrates DNA replication restart homeostasis by suppressing mutagenic RAD52 and POLθ pathways. Elife. 2018;7: e31723. 10.7554/eLife.31723. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43.Sawyer SL, Malik HS. Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis. Proc Natl Acad Sci USA. 2006;103:17614–21769. 10.1073/pnas.0605468103. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44.Schmiady H, Sperling K, Kentenich H, Stauber M. Prematurely condensed human sperm chromosomes after in vitro fertilization (IVF). Hum Genet. 1986;74:441–3. 10.1007/BF00280502. [DOI] [PubMed] [Google Scholar]
- 45.Schmiady H, Neitzel H. Arrest of human oocytes during meiosis I in two sisters of consanguineous parents: first evidence for an autosomal recessive trait in human infertility: case report. Hum Reprod. 2002;17:2556–9. 10.1093/humrep/17.10.2556. [DOI] [PubMed] [Google Scholar]
- 46.Schwarz JM, Rödelsperger C, Schuelke M, Seelow D. Mutationtaster evaluates disease-causing potential of sequence alterations. Nat Methods. 2010;7:575–6. 10.1038/nmeth0810-575. [DOI] [PubMed] [Google Scholar]
- 47.Sikorski RS, Hieter P. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics. 1989;122:19–27. 10.1093/genetics/122. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 48.Solovova OA, Chernykh VB. Genetics of oocyte maturation defects and early embryo development arrest. Genes (Basel). 2022;13(11): 1920. 10.3390/genes13111920. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 49.Sullivan-Pyke CS, Senapati S, Mainigi MA, Barnhart KT. In vitro fertilization and adverse obstetric and perinatal outcomes. Semin Perinatol. 2017;41:345–53. 10.1053/j.semperi.2017.07.001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 50.Timmermann B, Kerick M, Roehr C, Fischer A, Isau M, Boerno ST, Wunderlich A, Barmeyer C, Seemann P, Koenig J, Lappe M, Kuss AW, Garshasbi M, Bertram L, Trappe K, Werber M, Herrmann BG, Zatloukal K, Lehrach H, Schweiger MR. Somatic mutation profiles of MSI and MSS colorectal cancer identified by whole exome next generation sequencing and bioinformatics analysis. PLoS ONE. 2010;5: e15661. 10.1371/journal.pone.0015661. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 51.Tiwari A, Addis Jones O, Chan KL. 53BP1 can limit sister-chromatid rupture and rearrangements driven by a distinct ultrafine DNA bridging-breakage process. Nat Commun. 2018;9:677. 10.1038/s41467-018-03098-y. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 52.van Heemst D, Heyting C. Sister chromatid cohesion and recombination in meiosis. Chromosoma. 2000;109:10–26. 10.1007/s004120050408. [DOI] [PubMed] [Google Scholar]
- 53.von der Haar B, Sperling K, Gregor D. Maturing Xenopus oocytes induce chromosome condensation in somatic plant nuclei. Exp Cell Res. 1981;134:477–81. 10.1016/0014-4827(81)90450-x. [DOI] [PubMed] [Google Scholar]
- 54.Wojtasz L, Daniel K, Roig I, Bolcun-Filas E, Xu H, Boonsanay V, Eckmann CR, Cooke HJ, Jasin M, Keeney S, McKay MJ, Toth A. Mouse HORMAD1 and HORMAD2, two conserved meiotic chromosomal proteins, are depleted from synapsed chromosome axes with the help of TRIP13 AAA-ATPase. PLoS Gene. 2009;5: e1000702. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 55.Yost S, de Wolf B, Hanks S, Zachariou A, Marcozzi C, Clarke M, de Voer R, Etemad B, Uijttewaal E, Ramsay E, Wylie H, Elliott A, Picton S, Smith A, Smithson S, Seal S, Ruark E, Houge G, Pines J, Kops GJPL, Rahman N. Biallelic TRIP13 mutations predispose to Wilms tumor and chromosome missegregation. Nat Genet. 2017;49:1148–51. 10.1038/ng.3883. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Zanders S, Alani E. The pch2Delta mutation in baker’s yeast alters meiotic crossover levels and confers a defect in crossover interference. PLoS Genet. 2009;5: e1000571. 10.1371/journal.pgen.1000571. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 57.Zhang Z, Li B, Fu J, Li R, Diao F, Li C, Chen B, Du J, Zhou Z, Mu J, Yan Z, Wu L, Liu S, Wang W, Zhao L, Dong J, He L, Liang X, Kuang Y, Sun X, Sang Q, Wang L. Bi-allelic missense pathogenic variants in TRIP13 cause female infertility characterized by oocyte maturation arrest. Am J Hum Genet. 2020;107:15–23. 10.1016/j.ajhg.2020.05.001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58.Zhang X, Hu C, Wu L. Advances in the study of genetic factors and clinical interventions for fertilization failure. J Assist Reprod Genet. 2023;40:1787–805. 10.1007/s10815-023-02810-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
The data that support the findings of this study are available in this article. The additional data sets generated (i.e. Solid sequencing, Microsatellite analysis, Exome sequencing) are available from the corresponding author on reasonable request.



