ATM	axon tract associated microglia
ARM	activated response microglia
BP	biological process
CDAM	cross-disease-associated microglia module
CDF	cumulative distribution function
CTL	control
CPM	count per million
DAM	disease-associated microglia
DEG	differential expressed gene
FDR	false discovery rate
FPKM	fragments per kilobase of transcript per million mapped reads
GO	gene ontology
GWAS	genome-wide association study
HAM	human AD microglia
HuMicA	human microglia atlas
ImOLs	immune oligodendrocytes
LCM	laser capture microdissection
LCM-MN	laser capture microdissected motor neuron
LDAM	lipid droplet accumulating microglia
LRT	likelihood ratio test
M1	homeostatic/surveillant microglia
M2	protective microglia
MGnD	microglia neurodegenerative phenotype
MIMS	microglia inflamed in MS
NYGC	New York genome center
OD	oligodendrocyte
OPC	oligodendrocyte precursor cells
PAM	proliferative associated microglia
PC	principal component
PD-DAM	disease associated microglia in Parkinson’s disease
RIN	RNA integrity number
SMD	standardized mean difference
SOM	self-organizing map
snRNA-seq	single-nucleus RNA-seq
WAM	white matter associated microglia