1. Docking Conditions for Protein–Protein Complex Modeling.

reference complex		starting receptor			starting ligand
PDB ID	resolution (Å)	PDB ID	resolution (Å)	RMSD	PDB ID	resolution (Å)	RMSD	reference HDX exposure time (s)
1UGH	1.90	1AKZ	1.57	0.293	1UGI	1.55	0.553	1000
6DJL	3.10	1OIX	1.70	0.520	6IXE	3.35	2.516	30
8A0E	2.80	chain A			chain B			10,000
8F7A	3.78	chain ABCD			chain E			1000