| KRAB | Krüppel-associated box |
| KRAB-ZFPs | KRAB zinc finger proteins |
| H3K9me3 | H3K9 trimethylation |
| TFIIIA | Transcription factor IIIA |
| BRCA1 | Breast cancer susceptibility gene 1 |
| LC3b | Microtubule-associated protein 1A/1B-light chain 3B |
| ITGβ4 | Integrin β4 |
| VEGF | Vascular endothelial growth factor |
| CCND2 | Cyclin D2 |
| hMSCs | Human mesenchymal stem cells |
| LADs | Lamina-associated domains |
| hESCs | Human embryonic stem cells |
| TAC | Transverse aortic constriction |
| REP | Retinal pigment epithelial |
| M1BP | Motif 1-binding protein |
| Wg | Wingless |
| Pol II | Polymerase II |
| Xist | X-inactive-specific transcript |
| AD | Alzheimer’s disease |
| PD | Parkinson’s disease |
| AP | Acute pancreatitis |
| CHIT1 | Chitosanase 1 |
| CGRP | Calcitonin gene-related peptide |
| SIRT1 | Sirtuin 1 |
| TFEB | Transcription factor EB |
| LRRK2 | Leucine repeat kinase 2 |
| T2DM | Type 2 diabetes mellitus |
| AS | Atherosclerosis |
| CEL | Nε-carboxyethyl lysine |
| SBMA | Spinal and bulbar muscular atrophy |
| ALKBH5 | Alkb homolog 5 |
| MEK2 | Mitogen-activated protein kinase kinase 2 |
| RasGRP2 | Ras guanyl releasing protein 2 |
| IGF-2 | Insulin-like growth factor 2 |
| ALI | Acute lung injury |
| LPS | Lipopolysaccharide |
| COPD | Chronic obstructive pulmonary disease |
| LC3-II | Microtubule-associated protein 1A/1B-light chain 3-II |
| LAMP1 | Lysosome-associated membrane protein 1 |
| TFE3 | Transcription factor e3 |
| FAK | Focal adhesion kinase |
| EMT | Epithelial–mesenchymal transition |
| Ct-OATP1B3 | Cancer-type OATP1B3 |
| MMPs | Matrix metalloproteinases |
| FA | Focal adhesion |
| OS | Overall survival |
| shRNA | Short hairpin RNA |
| CCND1 | Cyclin D1 |
| BCL-2 | B-cell lymphoma/leukemia 2 |
| BAX | BCL-2 associated X protein |
| PFS | Progression-free survival |
| MMP26 | Matrix metalloproteinase 26 |
| PRSS3 | Serine protease 3 |
| EGFR | Epidermal growth factor receptor |
| cryo-EM | Cryo-electron microscopy |