TABLE 4.
ORFs containing the highest number of SNPs, as well as all members of the Pmp gene family
| ORFa | Predicted size (aa) | Total no. of SNPsb | No. of nonsynonymous SNPs | Putative function |
|---|---|---|---|---|
| CTA0447(CT412) | 975 | 3 | 2 | pmpA |
| CTA0884(CT812) | 1,531 | 7 | 3 | pmpD |
| CTA0954(CT874) | 878 | 12 | 9 | pmpI |
| CTA0951(CT871) | 1,013 | 15 | 6 | pmpG |
| CTA0715(CT658) | 335 | 17 | 3 | sfhB |
| CTA0429(CT394) | 392 | 18 | 10 | hrcA |
| CTA0448(CT413) | 1,751 | 19 | 13 | pmpB |
| CTA0166(CT157) | 403 | 20 | 15 | pld |
| CTA0751(CT690) | 321 | 21 | 1 | dppD |
| CTA0747(CT686) | 395 | 22 | 11 | ABC transporter-associated protein |
| CTA0738(CT678) | 245 | 24 | 3 | pyrH |
| CTA0449(CT414) | 1,784 | 28 | 20 | pmpC |
| CTA0498(CT456) | 1,106 | 33 | 25 | Tarp |
| CTA0733(CT675) | 356 | 33 | 5 | karG |
| CTA0675(CT622) | 651 | 39 | 20 | CHLPN 76-kDa homolog |
| CTA0153(CT144) | 285 | 42 | 14 | Hypothetical protein |
| CTA0156(CT147) | 1,449 | 47 | 30 | Hypothetical protein |
| CTA0739(CT679) | 282 | 58 | 13 | tsf |
| CTA0053(CT049) | 490 | 82 | 39 | Hypothetical protein |
| CTA0054(CT050) | 582 | 100 | 50 | Hypothetical protein |
| CTA0949(CT869) | 962 | 129 | 50 | pmpE |
| CTA0055(CT05) | 520 | 130 | 63 | Hypothetical protein |
| CTA0952(CT872) | 1,018 | 153 | 39 | pmpH |
| CTA0742(CT681) | 396 | 180 | 53 | ompA (MOMP) |
| CTA0950(CT870) | 1,034 | 260 | 84 | pmpF |
a
The A/HAR-13 ORF is listed first, with the D/UW-3 homolog listed in parentheses.
b
Total number of SNPs, both synonymous and nonsynonymous, found in the ORF of interest.