TABLE 4.
Descriptive statistics and Sawyer's test for recombination of five loci in B. hermsii GGI and GGIIa
| Group | Locus | No. of:
|
Aligned characters
|
Sawyer's test
|
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Samples | Alleles | Bp | No. of:
|
π | Maximum score | SD | P | BC | No. of fragments | |||
| Gaps | Polymorphisms (%) | |||||||||||
| All isolates | 16S rRNA | 31 | 2 | 1,273 | 0 | 5 (0.39) | 0.0019 | |||||
| GGI | 16S rRNA | 19 | 1 | 1,273 | 0 | 0 | 0 | |||||
| GGII | 16S rRNA | 12 | 1 | 1,273 | 0 | 0 | 0 | |||||
| All isolates | flaB | 31 | 5 | 1,002 | 0 | 16 (1.6) | 0.0064 | 1.67 | 0.87 | 0.17 | 0 | |
| GGI | flaB | 19 | 3 | 1,002 | 0 | 5 (0.5) | 0.0014 | |||||
| GGII | flaB | 12 | 2 | 1,002 | 0 | 1 (0.1) | 0.0005 | |||||
| All isolates | gyrB | 31 | 5 | 1,902 | 0 | 40 (2.1) | 0.0099 | 0.86 | −0.48 | 0.74 | 0 | |
| GGI | gyrB | 19 | 4 | 1,902 | 0 | 3 (0.16) | 0.0005 | |||||
| GGII | gyrB | 12 | 1 | 1,902 | 0 | 0 | 0 | |||||
| All isolates | glpQ | 31 | 7 | 1,026 | 6 | 37 (3.6) | 0.0172 | 2.17 | 0.66 | 0.18 | 0 | |
| GGI | glpQ | 19 | 4 | 1,026 | 6 | 3 (0.29) | 0.0010 | |||||
| GGII | glpQ | 12 | 3 | 1,026 | 6 | 2 (0.19) | 0.0009 | |||||
| All isolates | Concat | 31 | 3,930 | 6 | 93 (2.4) | 0.0109 | ||||||
| GGI | Concat | 19 | 3,924 | 6 | 11 (0.28) | 0.0009 | ||||||
| GGII | Concat | 12 | 3,930 | 6 | 3 (0.08) | 0.0004 | ||||||
| All isolates | vtp | 31 | 13 | 654 | 44 | 268 (44) | 0.1745 | 21.30 | 14.72 | <10−5 | 0.020 | 57 |
| GGI | vtp | 19 | 10 | 654 | 44 | 243 (40) | 0.1790 | 23.98 | 17.43 | <10−5 | 0.017 | 23 |
| GGII | vtp | 12 | 3 | 654 | 13 | 196 (30) | 0.1124 | 5.19 | 3.46 | 0.007 | 0 | |
a
π, Mean nucleotide at each aligned position; SD, standard deviations above the mean; P, P value with Bonferroni correction for multiple samples; BC, Bonferroni corrected.