Table 3.
Genetic variation and SNP analysis across sampled species and loci.
| etgra9 | etgra12a | etgra12b | emgra9 | emgra12a | emgra 12b | |
|---|---|---|---|---|---|---|
| No. sequences analysed | 15 | 16 | 14 | 11 | 8 | 10 |
| No. countries represented | 9 | 9 | 8 | 7 | 5 | 7 |
| No. sites (base pairs) | 1005 | 1400 | 1305 | 1121 | 1311 | 1019 |
| No. polymorphic sites | 1 | 1 | 1 | 13 | 2 | 3 |
| Coding polymorphisms | 1 | 1 | 1 | 8 | 2 | 2 |
| Non-coding polymorphisms | 0 | 0 | 0 | 5 | 0 | 1 |
| Synonymous polymorphisms | 1 | 0 | 0 | 4 | 1 | 0 |
| Non-synonymous polymorphisms | 0 | 1 | 1 | 4 | 1 | 2 |
| No. haplotypes | 2 | 2 | 2 | 10 | 2 | 3 |
| Haplotype diversity | 0.133 | 0.233 | 0.440 | 0.982 | 0.429 | 0.511 |
| Variance of haplotype diversity | 0.01261 | 0.01578 | 0.01254 | 0.00215 | 0.02846 | 0.02700 |
| Standard deviation of haplotype diversity | 0.112 | 0.126 | 0.112 | 0.046 | 0.169 | 0.164 |
| Nucleotide diversity (Pi) | 0.00013 | 0.00017 | 0.00034 | 0.00563 | 0.00069 | 0.00090 |
| Adjusted dN/dS +1 | 0.5 | 2 | 2 | 1 | 1 | 3 |
| Tajima’s (D) | -1.15 | -0.44 | 0.84 | 0.41 | 0.41 | -1.03 |