Table 1.
Primer set used for RT-PCR amplification of the eight vRNAs of B/Yamanashi/166/98
Gene | Forward primer | Reverse primer |
---|---|---|
PB1 | Bm-PB1b-1: | Bm-PB1b-1200R: |
[1A] | TATTCGTCTCAGGGAGCAGAAGCGGAGCCTTTAAGATG | TATTCGTCTCGATGCCGTTCCTTCTTCATTGAAGAATGG |
PB1 | Bm-PB1b-1220: | Bm-PB1b-2369R: |
[1B] | TATTCGTCTCGGCATCTTTGTCGCCTGGGATGATGATG | ATATCGTCTCGTATTAGTAGAAACACGAGCCTT |
PB2 | Bm-PB2b-1: | Bm-PB2b-1145R: |
[2A] | TATTCGTCTCAGGGAGCAGAAGCGGAGCGTTTTCAAGATG | TATTCGTCTCTCTCATTTTGCTCTTTTTTAATATTCCCC |
PB2 | Bm-PB2b-1142: | Bm-PB2b-2396R |
[2B] | TATTCGTCTCATGAGAATGGAAAAACTACTAATAAATTCAGC | ATATCGTCTCGTATTAGTAGAAACACGAGCATT |
PA | Bm-PAb-1: | Bm-PAb-1261R: |
[3A] | TATTCGTCTCAGGGAGCAGAAGCGGTGCGTTTGA | TATTCGTCTCCCAGGGCCCTTTTACTTGTCAGAGTGC |
PA | Bm-PAb-1283: | Bm-PAb-2308R: |
[3B] | TATTCGTCTCTCCTGGATCTACCAGAAATAGGGCCAGAC | ATATCGTCTCGTATTAGTAGAAACACGTGCATT |
HA | MDV-B 5′ BsmBI-HA: | MDV-B 3′ BsmBI-HA: |
TATTCGTCTCAGGGAGCAGAAGCAGAGCATTTTCTAATATC | ATATCGTCTCGTATTAGTAGTAACAAGAGCATTTTTC | |
NP | MDV-B 5′ BsmBI-NP: | MDV-B 3′ BsmBI-NP: |
TATTCGTCTCAGGGAGCAGAAGCACAGCATTTTCTTGTG | ATATCGTCTCGTATTAGTAGAAACAACAGCATTTTTTAC | |
NA | Bm-NAb-1: | Bm-NAb-1557R: |
TATTCGTCTCAGGGAGCAGAAGCAGAGCA | ATATCGTCTCGTATTAGTAGTAACAAGAGCATTTT | |
M | MDV-B 5′ BsmBI-M: | MDV-B 3′ BsmBI-M: |
TATTCGTCTCAGGGAGCAGAAGCACGCACTTTCTTAAAATG | ATATCGTCTCGTATTAGTAGAAACAACGCACTTTTTCCAG | |
NS | MDV-B 5′ BsmBI-NS: | MDV-B 3′ BsmBI-NS: |
TATTCGTCTCAGGGAGCAGAAGCAGAGGATTTGTTTAGTC | ATATCGTCTCGTATTAGTAGTAACAAGAGGATTTTTAT |
The sequences complementary to the influenza sequences are shown in bold. The 5′-ends have recognition sequences for the restriction endonuclease BsmBI (Bm, CGTCTCN1/N5). The design of the primers for PB1, PB2, and PA allowed the amplification of two fragments (1A, 1B, 2A, 2B, 3A, 3B).