TABLE 1.
Primer designation | Sequence | Primer locationa | Reference or source |
---|---|---|---|
toxB.911F | 5′-ATA CCT ACC TGC TCT GGA TTG A-3′ | 79431-79452 | 30 |
toxB.1468R | 5′-TTC TTA CCT GAT CTG ATG CAG C-3′ | 80030-80009 | 30 |
toxB 5′int-up | 5′-TTT TCG CGT AAT GAT GC-3′ | 81278-81294 | This study |
toxB 5′int-lo | 5′-ACG CCG TGA GAA TAA TGT C-3′ | 81954-81936 | This study |
toxB 3′int-up | 5′-CAA CAG CCC CTT CAT TCC ATT C-3′ | 83708-83729 | This study |
toxB 3′int-lo | 5′-TTT TGC CAC ATT GCT AAG ATA ACG-3′ | 84277-84254 | This study |
toxB 5′ upper | 5′-AAA ATA ATT CAT CCC CCA GTT CT-3′ | 78906-78298 | 27 |
toxB 5′ lower | 5′-CCG CAC CAA AGG CAT TAG-3′ | 79472-79455 | 27 |
toxB 3′ upper | 5′-TAG CGG AAA GAA TAT TGG TAG TCA-3′ | 84703-84726 | 27 |
toxB 3′ lower | 5′-CTG TAG TGT GGC GGG AAC G-3′ | 85555-85537 | 27 |
Primer locations refer to nucleotides in the pO157 toxB sequence (GenBank accession no. AF074613).