TABLE 3.
Variation in loci used in the present A. baumannii MLST scheme
| Locus | Fragment size (bp) | No. of alleles | No. of polymorphic nucleotide sites | % Variable sites | % Nucleotide divergence between pair of alleles
|
dN/dSa | |
|---|---|---|---|---|---|---|---|
| Max | Avg | ||||||
| gltA | 484 | 6 | 45 | 9.29752 | 0.093 | 0.033 | 0.0318 (0.0273) |
| gyrB | 457 | 11 | 22 | 4.81400 | 0.031 | 0.017 | 0.0786 (0.0275) |
| gdhB | 396 | 11 | 23 | 5.80808 | 0.038 | 0.019 | 0.0594 (0.0520) |
| recA | 371 | 8 | 9 | 2.42588 | 0.016 | 0.009 | 0.0561 (0.0094) |
| cpn60 | 421 | 7 | 9 | 2.13777 | 0.083 | 0.025 | 0.2570 (0.0483) |
| gpi | 305 | 12 | 55 | 18.03280 | 0.141 | 0.060 | 0.0415 (0.0327) |
| rpoD | 513 | 10 | 8 | 1.55945 | 0.022 | 0.009 | 0.1232 (0.0826) |
a
The dN/dS values for all Acinetobacter gene sequences obtained in this study are given in parentheses. Max, maximum.