Table 8.
Top 30 pathways identified by PICRUSt2.
| Overall | Buchnera | All other genera | |||
|---|---|---|---|---|---|
| Pathway | Count | Pathway | Count | Pathway | Count |
| Fatty acid beta-oxidation I | 49990374.39 | Fatty acid beta-oxidation I | 47863170.30 | Aerobic respiration I (cytochrome C) | 4020259.41 |
| Anhydromuropeptides recycling | 43950267.23 | Anhydromuropeptides recycling | 42417511.74 | Pyruvate fermentation to isobutanol (engineered) | 2772569.39 |
| TCA cycle I (prokaryotic) | 43150337.13 | TCA cycle I (prokaryotic) | 41048308.93 | Gondoate biosynthesis (anaerobic) | 2763286.94 |
| Glycogen degradation I (bacterial) | 41334843.09 | Glycogen degradation I (bacterial) | 39880951.18 | Mycolate biosynthesis | 2430000.10 |
| Pentose phosphate pathway (non-oxidative branch) | 40209945.56 | Pentose phosphate pathway (non-oxidative branch) | 38368121.19 | L-isoleucine biosynthesis II | 2422960.26 |
| L-isoleucine biosynthesis II | 39849625.83 | L-isoleucine biosynthesis II | 37428656.17 | Fatty acid elongation—saturated | 2396467.81 |
| Mixed acid fermentation | 38199142.29 | Mixed acid fermentation | 36682065.34 | L-valine biosynthesis | 2313292.91 |
| Pyruvate fermentation to isobutanol (engineered) | 38100324.98 | Superpathway of L-alanine biosynthesis | 35986568.69 | L-isoleucine biosynthesis I (from threonine) | 2313292.91 |
| L-valine biosynthesis | 37781648.12 | Peptidoglycan maturation (meso-diaminopimelate containing) | 35935247.60 | Oleate biosynthesis IV (anaerobic) | 2258649.33 |
| L-isoleucine biosynthesis I (from threonine) | 37781648.12 | TCA cycle VII (acetate-producers) | 35921454.54 | Fatty acid beta-oxidation I | 2243395.81 |
| Superpathway of L-alanine biosynthesis | 37772950.94 | Pyruvate fermentation to isobutanol (engineered) | 35526994.20 | Cis-vaccenate biosynthesis | 2222135.39 |
| TCA cycle VII (acetate-producers) | 37632344.03 | L-valine biosynthesis | 35476963.41 | Palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) | 2194399.64 |
| Peptidoglycan maturation (meso-diaminopimelate containing) | 37561343.79 | L-isoleucine biosynthesis I (from threonine) | 35476963.41 | Stearate biosynthesis II (bacteria and plants) | 2148106.46 |
| Superpathway of branched amino acid biosynthesis | 36744146.58 | Superpathway of branched amino acid biosynthesis | 34714338.68 | TCA cycle I (prokaryotic) | 2140322.97 |
| Sulfate reduction I (assimilatory) | 35835117.59 | Sulfate reduction I (assimilatory) | 33815384.14 | (5Z)-dodec-5-enoate biosynthesis | 2139672.10 |
| Superpathway of phospholipid biosynthesis I (bacteria) | 34688494.38 | Superpathway of phospholipid biosynthesis I (bacteria) | 32695985.67 | Superpathway of fatty acid biosynthesis initiation (E. coli) | 2121814.72 |
| Superpathway of adenosine nucleotides de novo biosynthesis I | 34337541.32 | Starch degradation V | 32652900.69 | Superpathway of L-serine and glycine biosynthesis I | 2114370.67 |
| L-isoleucine biosynthesis III | 34249341.67 | Superpathway of adenosine nucleotides de novo biosynthesis I | 32550201.50 | CDP-diacylglycerol biosynthesis I | 2100599.12 |
| Starch degradation V | 34051427.17 | L-isoleucine biosynthesis III | 32366604.71 | CDP-diacylglycerol biosynthesis II | 2100599.12 |
| Guanosine deoxyribonucleotides de novo biosynthesis II | 33696318.85 | Guanosine deoxyribonucleotides de novo biosynthesis II | 31948746.12 | Pentose phosphate pathway (non-oxidative branch) | 2090619.61 |
| Adenosine deoxyribonucleotides de novo biosynthesis II | 33696318.85 | Adenosine deoxyribonucleotides de novo biosynthesis II | 31948746.12 | Superpathway of branched amino acid biosynthesis | 2055294.89 |
| Superpathway of L-isoleucine biosynthesis I | 33623938.23 | Superpathway of polyamine biosynthesis I | 31898110.50 | Fatty acid salvage | 1993050.79 |
| Phosphatidylglycerol biosynthesis II (non-plastidic) | 32704959.97 | Hexitol fermentation to lactate, formate, ethanol and acetate | 31862604.60 | Superpathway of phospholipid biosynthesis I (bacteria) | 1991151.37 |
| Phosphatidylglycerol biosynthesis I (plastidic) | 32704959.97 | dTDP-N-acetylthomosamine biosynthesis | 31861896.87 | Superpathway of sulfate assimilation and cysteine biosynthesis | 1965566.64 |
| Superpathway of adenosine nucleotides de novo biosynthesis II | 32681382.85 | Superpathway of L-isoleucine biosynthesis I | 31801573.14 | L-isoleucine biosynthesis III | 1920492.83 |
| Superpathway of polyamine biosynthesis I | 32545588.40 | Superpathway of L-methionine biosynthesis (transsulfuration) | 31406712.49 | Urate biosynthesis/inosine 5′-phosphate degradation | 1915638.53 |
| L-lysine biosynthesis III | 32515917.24 | Superpathway of adenosine nucleotides de novo biosynthesis II | 30965700.29 | 8-amino-7-oxononanoate biosynthesis I | 1899244.13 |
| Superpathway of L-methionine biosynthesis (transsulfuration) | 32509176.89 | Phosphatidylglycerol biosynthesis II (non-plastidic) | 30824987.37 | Sulfate reduction I (assimilatory) | 1899170.77 |
| dTDP-N-acetylthomosamine biosynthesis | 32439110.11 | Phosphatidylglycerol biosynthesis I (plastidic) | 30824987.37 | Peptidoglycan maturation (meso-diaminopimelate containing) | 1893845.34 |
| Superpathway of L-phenylalanine biosynthesis | 32293766.33 | L-lysine biosynthesis III | 30802845.50 | Superpathway of adenosine nucleotides de novo biosynthesis I | 1886912.51 |