| AD | Alzheimer’s disease |
| Aβ | Amyloid-β |
| ALS | Amyotrophic lateral sclerosis |
| APP | Amyloid precursor protein |
| BACE1 | β-Site APP cleaving enzyme-1 |
| CLABPs | Chaperone-like amyloid-binding proteins |
| CSF | Cerebrospinal fluid |
| ETC | Electron transport chain |
| ER | Endoplasmic reticulum |
| ERAD | ER associated degradation |
| ERMES | ER-mitochondria encounter structure |
| FAD | Familial AD |
| FTD | Frontotemporal dementia |
| Grp75 | Glucose-regulated protein 75 |
| Hsps | Heat shock proteins |
| HD | Huntington’s disease |
| IP3Rs | inositol 1,4,5-trisphosphate receptors |
| LBD | Lewy-body dementia |
| LOAD | Late-onset Alzheimer’s disease |
| LTP | Long-term potentiation |
| MAMs | Mitochondria-associated ER membranes |
| MERCS | Mitochondrial–ER contact sites |
| MCU | Mitochondrial calcium uniporter |
| mPTP | Mitochondrial permeability transition pore |
| NBD | Nucleotide binding domain |
| NFTs | Neurofibrillary tangles |
| PACS2 | Phosphor-furin acidic cluster sorting protein 2 |
| PDI | Protein disulfide isomerase |
| PD | Parkinson’s disease |
| PolyQ | Polyglutamine |
| RyRs | Ryanodine receptors |
| ROS | Reactive oxygen species |
| S1R | Sigma-1 receptor |
| SBD | Substrate binding domain |
| SOCE | Store-operated Ca2+ entry |
| STIM | Stromal interaction molecule |
| TEM | Transmission electron microscopy |
| TLR | Toll like receptors |
| TRAP1 | Tumor necrosis factor receptor-associated protein 1 |
| TRPC | Transient receptor potential canonical |
| Ub | Ubiquitin |
| UPR | Unfolded protein responses |
| UPS | Ubiquitin–proteasome system |
| VD | Vascular dementia |