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. 2025 May 1;10(8):2789–2799. doi: 10.1016/j.ekir.2025.04.056

Table 5.

Conformity between suspected clinical diagnoses and molecular diagnoses and additional clinical advice for modified diagnoses

Stone type (N) Suspected Clinical diagnosisa (N) Molecular diagnosis (N) Accurate diagnosis Accuracy rate Additional clinical adviceb
Calcium oxalate (CaOx) (160) Primary hyperoxaluria (91) AGXT (24) Yes 67% Pyridoxine therapy
GRHPR (12) -
HOGA1 (35) -
Negative (30) No Monitoring urine oxalate
Idiopathic hypercalciuria (9) GRHPR (1) No 89% Alkaline citrate and hydrochlorothiazide therapy; Monitoring kidney function, and urine oxalate
SLC34A3 (1) Yes -
Negative (7) -
Idiopathic hypocitraturia (15) AGXT (1) No 73% Pyridoxine and alkaline citrate therapy; Monitoring kidney function, and urine oxalate
GRHPR (1) Alkaline citrate therapy; Monitoring kidney function, and urine oxalate
OXGR1 (1) Alkaline citrate therapy; Monitoring kidney function, and urine oxalate
SLC7A9 (1) Alkaline citrate therapy; Possible treatment with tiopronin
Negative (11) Yes -
Idiopathic CaOx (45) SLC2A9 (2) No 93% Monitoring urine uric acid; Purine reduced diet
HOGA1 (1) Monitoring kidney function, and urine oxalate
Negative (42) Yes -
Cystine (44) Cystinuria (44) SLC3A1 (25) Yes 98% -
SLC7A9 (18) -
Negative (1) No -
Carbonate apatite (CA) (24) Primary hyperoxaluria (6) HOGA1 (2) Yes 33% -
SLC26A1 (1) No -
Negative (3) Monitoring urine oxalate
Idiopathic hypocitraturia (2) AGXT (1) No 0 Pyridoxine and alkaline citrate therapy; Monitoring kidney function, and urine oxalate
SLC34A1 (1) Alkaline citrate therapy; Monitoring urine calcium
Idiopathic hypercalciuria (6) Negative (6) Yes 100% -
Infection (2) Negative (2) Yes 100% -
Idiopathic CA (8) SLC3A1 (1) No 88% Alkaline citrate therapy; Possible treatment with tiopronin
Negative (7) Yes -
Brushite (CHPD) (1) Renal tubular acidosis (1) SLC4A1 (1) Yes 100% -
Xanthine (1) Xanthinuria (1) XDH (1) Yes 100% Purine reduced diet
2,8-dihydroxyadenine (1) Adenine phosphoribosyltransferase deficiency (1) APRT (1) Yes 100% Purine reduced diet
OCP, UA, AU, MAP (8) Idiopathic and infection (8) Negative (8) Yes 100% -
Total 239 - - 81% -

AU, ammonium urate; CHPD, calcium hydrogen phosphate dihydrate; MAP, magnesium ammonium phosphate ; OCP, octacalcium phosphate; UA, uric acid.

a

Suspected clinical diagnoses were based on stone analysis and stone-specific metabolic evaluation.

b

All stone formers followed our general prevention advice, such as maintaining fluid intake of 2.5 to 3.0 L/d, a balanced diet rich in vegetables and limited in protein and salt; and normal body mass index with exercise, and monitoring stone recurrence by a regular follow-up.