Table 2.
PTT and Sequencing Primers
Fragment | Sequence | AnnealingTemperature(°C) | Position(cDNA) | Size(bp) | Exon(s) |
cDNA: | |||||
PTT 1 | (F) GATGCCGAGAACCTCCTCG | 63 | 1829–3869 | 2,041 | 8–15 |
(R) TCATGTCCACGCTGAGTCCG | |||||
PTT 2 | (F) GCCAACCACACCTATGCCTCG | 62 | 3740–5431 | 1,692 | 15 |
(R) GGCACTGAGGGTGACGCTTGT | |||||
PTT 3 | (F) AGCGGCAAAGGCTTCTCGCTC | 66 | 5246–7052 | 1,807 | 15 |
(R) ACTCGCTCCCATCCAGCACC | |||||
PTT 4 | (F) ACTGAGTACCGCTGGGAGGTGTATC | 66 | 6758–7942 | 1,185 | 15–20 |
(R) GGGCTCTGGGAGGGTGATG | |||||
PTT 5 | (F) AAGACGCTGGTGCTGGATGAG | 62 | 7448–8644 | 1,197 | 18–23 |
(R) AGCCTCGGGGATGGAGAAG | |||||
cSeq 1 | (F) TGAGTACCGCTGGGAGGTGTATC | 62 | 6760–7336 | 577 | 15–17 |
(R) TGCCTTGCAGGACACACACTC | |||||
cSeq 2 | (F) TGTCCCTGAGGGTCCACACTG | 62 | 8163–8681 | 519 | 22–23 |
(R) GCACCACGTCACTGAGGTTGG | |||||
cSeq 3 | (F) CTCAACGAGGAGCCCCTGAC | 62 | 8516–9126 | 611 | 23–24 |
(R) TCAGCACCCTGGAGTGACTCTG | |||||
cSeq 4 | (F) CAGTCTACCTACACTCGGAGCCC | 62 | 9039–9648 | 610 | 24–27 |
(R) TCCACCCCATACAGCATGATG | |||||
Genomic: | |||||
GenSeq 1 | (F) CCTGAGCTGCGGCCTCCG | 64 | 3580–3799 | 220 | 1 |
(R) CAGTTGACGCGGCAGGCG | |||||
GenSeq 2 | (F) TGCGAGCCCCCCTGCCTC | 66 | 3744–3923 | 180 | 1 |
(R) AACCCGCCCACGCCCGCCCGTCC | |||||
GenSeq 3 | (F) CTTGGGGATGCTGGCAATG | 59 | 19810–20239 | 430 | 2–3 |
(R) AACTGGGAGGGCAGAAGGG | |||||
GenSeq 4 | (F) AGTGGGGGGCTGGCATAGAC | 64 | 20371–21017 | 647 | 4–5 |
(R) GCAAAGGAGGCACTGGAGGG | |||||
GenSeq 5 | (F) CTTCTAGGTGAGGAGTATGTCGCC | 64 | 20812–21593 | 782 | 5 |
(R) AACGAGGGTGTCAACGGTCAG | |||||
GenSeq 6 | (F) ACCGTTGACACCCTCGTTCC | 60 | 21576–21855 | 280 | 6 |
(R) TCTCTGCCCCAGTGCTTCAG | |||||
GenSeq 7 | (F) CTGTGAGGGTGGGAGGATGG | 64 | 22166–22787 | 622 | 7–8 |
(R) GGAGGGCAGGTTGTAGAACGTG |