TABLE 5.
Shared sequence positions of B16a
Hexon region | Nucleotide or amino acid positionb
|
DNAc
|
Proteinc
|
|||
---|---|---|---|---|---|---|
nt | aa | Species E | Species B | Species E | Species B | |
C1 (5′ end) | 1-300 | 1-100 | 0 | 14 | 0 | 2 |
C1 | 301-411 | 101-137 | 14 | 0 | 2 | 0 |
V1 | 412-615 | 138-205 | 55 | 1 | 24 | 1 |
C2 | 616-696 | 206-232 | 1 | 1 | 4 | 0 |
V2 | 697-891 | 233-297 | 34 | 1 | 19 | 0 |
C3 | 892-1200 | 298-400 | 11 | 0 | 0 | 0 |
V3 | 1201-1326 | 401-442 | 20 | 3 | 7 | 2 |
C4 | 1327-1365 | 443-455 | 2 | 0 | 0 | 0 |
Recombinant region | 301-1365 | 101-455 | 137 | 6 | 56 | 3 |
C4 (3′-end) | 1366-2820 | 456-940 | 3 | 156 | 1 | 27 |
Based on an alignment of hexon sequence E04 and sequences of the serotypes of species B (including D51).
Positions relate to the DNA and protein sequences of B16.
Numbers indicate how many nucleotide or amino acid positions in B16 were identical to either E or B serotypes.