Table 2.
Coexisting microorganisms tested by mNGS.
| Case number | Microorganism detected by mNGS | Genus-specific read number (reads) |
|---|---|---|
| 1 | HSV2, EBV | 11, 4 |
| 3 | Streptococcus oralis, Streptococcus mitis, Abiotrophia defectiva | 158,134, 3,738, 775 |
| 4 | Enterococcus faecalis, Torque teno virus, mesovirus 1 | 16,746, 9, 5 |
| 8 | Aspergillus oryzae, Torque teno virus | 72, 4 |
| 10 | Ewingella americana, Serratia grimesii, Byssochlamys spectabilis | 653,216, 146,208, 122 |
| 13 | Candida albicans, Torque teno virus | 32, 14 |
| 15 | VZV, EBV | 24, 7 |
| 18 | VZV, EBV | 79,351, 7 |
| 19 | Candida albicans, Human beta herpesvirus 5 | 17,270, 1,496,114 |
| 20 | VZV, Mycobacterium abscessus, Candida parapsilosis | 53,630, 7, 4 |
| 21 | Acinetobacter baumannii, HSV1 | 7,770, 5 |
| 22 | VZV, Staphylococcus aureus | 199,700, 22 |
| 24 | VZV, Staphylococcus aureus | 24,058, 39 |
| 25 | Acinetobacter pittii, Treponema pallidum, Staphylococcus cohnii | 11,401, 517, 1,033 |
| 26 | Staphylococcus lugdunensis, Staphylococcus aureus | 395, 66 |
| 30 | Arthrobacter woluwensis, Torque teno virus | 30,014, 8 |
| 33 | Toxoplasma gondii, Streptococcus constellatus, Fusarium solani | 776, 6, 4 |
| 34 | HSV2, EBV | 4, 3 |
| 41 | Citrobacter fraudii, Gamma papillomavirus 8 | 161, 3 |
| 43 | Mycorrhizal pine, Citrobacter brucei, Beta papillomavirus 2 | 1,051, 879, 5 |
| 50 | Klebsiella pneumoniae, Torque teno virus | 57, 7 |
| 51 | Streptococcus pseudopneumoniae, Torque teno virus | 42,830, 19 |
| 54 | Staphylococcus aureus, EBV, Torque teno virus | 70, 30, 5 |
mNGS, Metagenomic next-generation sequencing; HSV, herpes simplex virus; EBV, Epstein–Barr virus; VZV, varicella zoster virus.