Table 1.
Cryo-EM data collection, refinement and validation statistics.
| #1 FOXP3ΔN_TTG 24 (EMDB-46499) (PDB: 9D2L ) | #2 FOXP3ΔN_TTT TG15_3DNA (EMDB-46480) (PDB:9D22) | #3 FOXP3ΔN_TTT TG15_2DNA_1 (EMDB-46493) (PDB:9D2E) | #4 FOXP3ΔN_TTTT G15_2DNA_2 (EMDB-46498) (PDB: 9D2J) | |
|---|---|---|---|---|
| Data collection and processing | ||||
| Magnification | 105000 | 105000 | 105000 | 105000 |
| Voltage (kV) | 300 | 300 | 300 | 300 |
| Electron exposure (e–/Å2) | 60 | 60 | 60 | 60 |
| Defocus range (μm) | −0.8 to −2.2 | −0.8 to −2.2 | −0.8 to −2.2 | −0.8 to −2.2 |
| Pixel size (Å) | 0.827 | 0.827 | 0.827 | 0.827 |
| Symmetry imposed | C2 | C1 | C1 | C1 |
| Initial particle images (no.) | 2535992 | 1327974 | 1327974 | 1327974 |
| Final particle images (no.) | 1340131 | 630564 | 195660 | 259858 |
| Map resolution (Å) | 3.0 | 2.6 | 2.9 | 2.8 |
| FSC threshold | 0.143 | 0.143 | 0.143 | 0.143 |
| Refinement | ||||
| Initial model used (PDB code) | 7TDX | 7TDX | 7TDX | 7TDX |
| Model resolution (Å) | 3.1 | 2.9 | 3.1 | 3.1 |
| FSC threshold | 0.5 | 0.5 | 0.5 | 0.5 |
| Map sharpening B factor (Å2) | −168.5 | −75.0 | −54.9 | −75.3 |
| Model composition | ||||
| Non-hydrogen atoms | 24688 | 13390 | 9580 | 9304 |
| Protein residues | 2471 | 968 | 705 | 695 |
| Ligands | 386 | 264 | 186 | 186 |
| R.m.s. deviations | ||||
| Bond lengths (Å) | 0.004 | 0.003 | 0.005 | 0.004 |
| Bond angles (°) | 0.596 | 0.562 | 0.635 | 0.595 |
| Validation | ||||
| Clashscore | 8.64 | 6.58 | 12.73 | 8.79 |
| Poor rotamers (%) | 3.41 | 3.50 | 4.31 | 4.52 |
| Ramachandran plot | ||||
| Favored (%) | 92.92 | 93.87 | 94.19 | 91.90 |
| Allowed (%) | 7.08 | 6.13 | 5.81 | 8.10 |
| Disallowed (%) | 0 | 0 | 0 | 0 |