Table 4.
Statistical information of genome assembly, evaluation and prediction of T. sanguinea ZHSJ.
| S: No | Feature | Value |
|---|---|---|
| Genome assembly | ||
| 1. | Total contig number | 135 |
| 2. | Total bases in contig | 41324262 bp |
| 3. | Large contig length | 4110638 bp |
| 4. | Contig N50 | 2813802 bp |
| 5. | Contig N90 | 69383 bp |
| 6. | G + C | 52.08% |
| Genome assembly evaluation | ||
| BUSCO | ||
| 7. | Complete | 94.3% |
| 8. | Complete duplicated | 0.4% |
| 9. | Fragmented | 2.0% |
| 10. | Missing | 3.7% |
| CEGMA | ||
| 11. | Complete | 94.35% |
| 12. | Partial | 95.97% |
| 13. | Total Orthologs number | 247 |
| 14. | Average Orthologs number | 1.06 |
| Genetic prediction | ||
| Coding gene prediction | ||
| 15. | Number of coding genes | 9049 |
| 16. | Total gene length | 23070809 bp |
| 17. | Gene average length | 2549.54 bp |
| 18. | Gene density | 0.22 kb |
| 19. | GC content in gene region | 57.39% |
| 20. | Percentage of genes in genome | 55.83% |
| 21. | Intergenetic region length | 18253453 bp |
| 22. | GC content in intergenetic region | 54.93% |
| 23. | Genome percentage in intergenetic region | 44.17% |
| 24. | Transposable elements | 209 |
| rRNA prediction | ||
| 25. | Total rRNAs | 1035 |
| 26. | 5S rRNA | 259 |
| 27. | 5.8S rRNA | 258 |
| 28. | 18S rRNA | 256 |
| 29. | 28S rRNA | 262 |
| Transcriptome assembly | ||
| 30. | Number of genes | 11861 |
| 31. | Gene coverage | 96.37% |
| 32. | GC (%) | 57.9754% |
| 33. | N50 number | 2865 |
| 34. | N50 length | 2316 |
| 35. | Maximum length | 15161 |
| 36. | Minimum length | 201 |
| 37. | Average length | 1715 |
| 38. | Total assembled bases | 2,03,45,744 bp |
| Denovo prediction | ||
| 39. | Number of coding genes | 12268 |
| 40. | Total gene length | 20258617 bp |
| 41. | Gene average length | 1651.34 bp |
| 42. | Gene density | 3.25 kb |
| 43. | GC content in gene region | 56.91% |
| 44. | Percentage of genes in genome | 50.78% |
| 45. | Intergenetic region length | 19636407 bp |
| 46. | GC content in intergenetic region | 55.43% |
| 47. | Genome percentage in intergenetic region | 44.17% |
| 48. | Transposable elements | 209 |
The genome sequence and transcriptome sequence after quality control were subjected to assembly and genetic prediction.