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. 2025 Aug 21;12:1460. doi: 10.1038/s41597-025-05798-9

Table 4.

Statistical information of genome assembly, evaluation and prediction of T. sanguinea ZHSJ.

S: No Feature Value
Genome assembly
1. Total contig number 135
2. Total bases in contig 41324262 bp
3. Large contig length 4110638 bp
4. Contig N50 2813802 bp
5. Contig N90 69383 bp
6. G + C 52.08%
Genome assembly evaluation
BUSCO
7. Complete 94.3%
8. Complete duplicated 0.4%
9. Fragmented 2.0%
10. Missing 3.7%
CEGMA
11. Complete 94.35%
12. Partial 95.97%
13. Total Orthologs number 247
14. Average Orthologs number 1.06
Genetic prediction
Coding gene prediction
15. Number of coding genes 9049
16. Total gene length 23070809 bp
17. Gene average length 2549.54 bp
18. Gene density 0.22 kb
19. GC content in gene region 57.39%
20. Percentage of genes in genome 55.83%
21. Intergenetic region length 18253453 bp
22. GC content in intergenetic region 54.93%
23. Genome percentage in intergenetic region 44.17%
24. Transposable elements 209
rRNA prediction
25. Total rRNAs 1035
26. 5S rRNA 259
27. 5.8S rRNA 258
28. 18S rRNA 256
29. 28S rRNA 262
Transcriptome assembly
30. Number of genes 11861
31. Gene coverage 96.37%
32. GC (%) 57.9754%
33. N50 number 2865
34. N50 length 2316
35. Maximum length 15161
36. Minimum length 201
37. Average length 1715
38. Total assembled bases 2,03,45,744 bp
Denovo prediction
39. Number of coding genes 12268
40. Total gene length 20258617 bp
41. Gene average length 1651.34 bp
42. Gene density 3.25 kb
43. GC content in gene region 56.91%
44. Percentage of genes in genome 50.78%
45. Intergenetic region length 19636407 bp
46. GC content in intergenetic region 55.43%
47. Genome percentage in intergenetic region 44.17%
48. Transposable elements 209

The genome sequence and transcriptome sequence after quality control were subjected to assembly and genetic prediction.