Table 7.
Assessment metrics of the genome assembly and annotation.
| Type | Evaluation Methods | Results | |
|---|---|---|---|
| Genome accuracy and completeness | Mapping short reads rate | 99.46% | |
| Mapping HiFi reads rate | 99.99% | ||
| Mapping ONT reads rate | 98.43% | ||
| QV | Short reads | 40.59 | |
| HiFi reads | 57.80 | ||
| CRAQ | R-AQI | 98.42% | |
| S-AQI | 99.45% | ||
| BUSCO | 100% | ||
| Annotation quality | Complete BUSCOs | 98.8% (3,599) | |
| Complete and single-copy BUSCOs (S) | 98.2% (3,576) | ||
| Complete and duplicated BUSCOs (D) | 0.6% (23) | ||
| Fragmented BUSCOs (F) | 0 (0) | ||
| Missing BUSCOs (M) | 1.2% (41) | ||
| RNA-seq coverage ratio of the exonic regions | 94.71% | ||