Table 4.
Comparative data on codon usage and G+C content in the studied region of the kai gene family and some other genes of N. linckia and other cyanobacteria
| Gene (accession number) | Promoter/ intergenic spacer*
|
Coding region
|
|||
|---|---|---|---|---|---|
| G+C | CBI | G+C2 | G+C3s | G+C | |
| kai | |||||
| Nodularia PCC 73104 | 0.286 | 0.425 | 0.368 | 0.336 | 0.419 |
| Cylindrospermum PCC 7417 | 0.289 | 0.398 | 0.375 | 0.353 | 0.423 |
| N. punctiforme | 0.246 | 0.538 | 0.370 | 0.273 | 0.400 |
| kaiI, N. linckia | 0.350 | 0.452 | 0.373 | 0.323 | 0.413 |
| kaiII, N. linckia | 0.405 | 0.482 | 0.378 | 0.334 | 0.414 |
| kaiIII, N. linckia | 0.314 | 0.490 | 0.375 | 0.332 | 0.412 |
| kaiIV, N. linckia | 0.226 | 0.470 | 0.366 | 0.342 | 0.415 |
| kaiV, N. linckia | 0.321 | 0.458 | 0.374 | 0.320 | 0.411 |
| Average in kai of N. linckia | 0.368 | 0.473 | 0.374 | 0.330 | 0.413 |
| Acetyl-CoA synthase, N. linckia (AY037787) | — | 0.712 | 0.463 | 0.918 | 0.661 |
| dnaK, N. linckia (AF388880) | 0.374 | 0.409 | 0.439 | 0.421 | 0.490 |
| sodF, N. linckia (AY055243) | 0.320 | 0.252 | 0.370 | 0.464 | 0.455 |
| Ribosomal protein L12, Synechocystis (X53178)† | 0.368 | 0.693 | 0.398 | 0.408 | 0.484 |
| trpA, N. punctiforme (AF288131) | 0.478 | 0.405 | 0.439 | 0.409 | 0.487 |
G + C2 − GC content at the second codon positions; G + C3s − GC content at third (synonymous) codon positions; G + C − GC content in the genomic region.
In kai gene.
Ref. 64.