Table 2.
m5C-related modifications in the diagnosis of colorectal cancer
| References | Study type | Population | Biomarkers | Grouped control | Screening models (AUC, sensitivity, specificity) |
|---|---|---|---|---|---|
| [80] | Retrospective cohort study |
TCGA: 434 COAD 157 READ IHC: 80 Normal 80 READ |
NSUN4, NSUN7, DNMT1 | Normal/COAD/READ |
TCGA cohort: AUC of one-year OS = 0.803 AUC of three-year OS = 0.855 AUC of five-year OS = 0.838 AUC of overall survival = 0.834 IHC independent cohort: AUC = 0.954 |
| [100] | Retrospective cohort study and case‒control study |
TCGA: 616 CRC ZNa: 40 Normal 40 CRC |
18 m5C regulatory factors | High-/low-risk groups |
TCGA cohort: AUC of one-year OS = 0.638 AUC of three-year OS = 0.668 AUC of five-year OS = 0.719 Nomogram model: AUC of one-year OS = 0.783 AUC of three-year OS = 0.801 AUC of five-year OS = 0.795 |
| [101] | Retrospective cohort study |
TCGA: 568 CRC 44 Normal |
11 m5C-related lncRNAs | Normal/CRC |
TCGA cohort: AUC of one-year OS = 0.758 AUC of three-year OS = 0.761 AUC of five-year OS = 0.811 |
| [16] | Retrospective cohort study |
TCGA & GEO: 1358 CRC |
21 m6A/m5C-related lncRNAs | High-/low-risk groups |
TCGA cohort: AUC = 0.712 GEO cohort: AUC = 0.721 |
| [75] | Case‒control study and retrospective cohort study |
Human samples: 196 CRC 83 Normal Mouse modelb |
m5C RNA methylation levels in peripheral blood immune cells | Normal/CRC |
m5C: AUC = 0.888, sensitivity 92.4%, specificity 69.8% m5C + CEA + CA19 − 9 + CA125: AUC = 0.937 |
| [102] | Retrospective cohort study | NSUN1 | Normal/CRC | ||
| [103] | Retrospective observational study |
Total: 3318 tumor samples (140 CRC) 5173 Normal |
14 m5C-related miRNAs | Normal/CRC |
Early diagnosis: AUC = 0.910 Diagnostic performance: AUC = 0.934, sensitivity 82.9%, specificity 91.6% |
aRepresents Zhongnan Hospital of Wuhan University cohort; bincludes ① MC38 Syngeneic model: 5 C57BL/6 control mice, 4 tumor-bearing mice ② AOM/DSS model: 5 C57BL/6 control mice, 8 CRC-induced mice ③ Apc-L850X model: 5 wild-type mice, 5 mutant mice ④ DLD-1 Xenograft model: 4 BALB/c control mice, 5 Oxaliplatin-treated mice, 4 5-FU-treated mice