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. Author manuscript; available in PMC: 2025 Aug 25.
Published in final edited form as: Int J Biol Macromol. 2021 Oct 5;192:138–150. doi: 10.1016/j.ijbiomac.2021.09.164

Table 1.

Data collection and refinement statistics.

EfPDT DpNDT

PDB code 7M5H 7O62
Data collection
Synchrotron source
APS ESRF
Beamline 19ID ID29
Wavelength (Å) 0.9794 0.9792
Space group F4132 P212121
Unit-cell parameters a = b = c = 219.90 a = 55.17; b = 86.37; c = 140.93
α = β = γ = 90 α = β = γ = 90
Resolution range (Å)
No. of measured reflectionsa
2.15–40 (2.15–2.19)
293,619(14346)
2.40–46.98 (2.4–2.53)
357,582 (49,715)
No. of unique reflections 25,312(1238) 27,119 (3856)
Mean (II) 33.64 (3.1) 14.8 (3.2)
Completeness (%) 99.9 (99.9) 99.9 (99.9)
Multiplicity
B-factor (Wilson plot, Å2)
11.6 (11.6)
35.97
13.2 (12.9)
42.1
Rmeas (%); Rpim (%) 7.9 (76.4); – 10.4 (73.7); 2.9 (20.4)
Refinement
Reflections used in refinement
25,244 26,665
Reflections used for Rfree 1291 1342
 Protein 2/2464 4/4171
 Others 2/12 4/24
 Water 244/244 20/20
 Rwork(%)/Rfree(%) 17.5/21.7 20.3/26.1
 Rms deviation bond length (Å) 0.001 0.012
 Rms deviation angles () 0.417 1.064
Ramachandran
 Favoured (%) 98.72 93.8
 Allowed (%) 1.28 4.7
a

Values for the highest resolution shell are given in parentheses.