Table 1:
List of protein markers with their associated barcodes for the CODEX experiment performed in this study.
| CODEX MARKER | Barcode | Company | Antibody Product Number |
|---|---|---|---|
| PDGFRA | BX001 | Abcam | Ab234965 |
| CD31 | BX002 | Akoya | CD31-BX002 |
| CD200 | BX003 | ThermoFisher Scientific | Ma170101 |
| PIEZO1 | BX005 | ThermoFisher | PA5-72973 |
| CORIN | BX006 | ThermoFisher | 711422 |
| CALU | BX007 | ThermoFisher | Pa5-109479 |
| CJUN | BX010 | Abcam | Ab247284 |
| CD29 | BX013 | ThermoFisher | Ma5-17103 |
| aSMA | BX014 | Abcam | Ab5694 |
| CD45 | BX015 | Akoya | CD45-BX015 |
| CK15 | BX016 | Abcam | Epr1614Y |
| YAP | BX017 | Abcam | Ab223126 |
| PANCK | BX020 | Biolegend | 914204 |
| SCA1 | BX021 | ThermoFisher | 710952 |
| ROBO2 | BX022 | Invitrogen | PA5-113491 |
| ADIPOQ | BX023 | ThermoFisher | PA184881 |
| LEF1 | BX024 | Abcam | EPR2029Y |
| CK19 | BX025 | Novus Bio | EP1580Y |
| CD4 | BX026 | AKOYA | CD4-BX026 |
| BLIMP1 | BX027 | ThermoFisher | Ma1-16874 |
| CALD1 | BX028 | Abcam | Ab238782 |
| CD8 | BX029 | Akoya | CD8-BX029 |
| FAK | BX030 | ThermoFisher | PA5-88093 |
| CD20 | BX032 | Novus | NBP2-54591 |
| PLIN1 | BX033 | Abcam | Ab3526 |
| PDGFRb | BX034 | ThermoFisher | PA5-96085 |
| CD26 | BX035 | Abcam | EPR18215 |
| COL 1 | BX036 | Abcam | Ab88147 |
| DES | BX041 | Abcam | Ab243931 |
| DLK | BX042 | Abcam | Ab119930 |
| SOX9 | BX043 | Abcam | EPR14335-78 |
| COL IV | BX045 | Abcam | Ab6586 |
| TAGLN | BX046 | Abcam | Ab14106 |
| Ki67 | BX047 | Akoya | Ki67-BX047 |
| VIM | BX049 | Abcam | Ab193555 |
| MYH11 | BX050 | Abcam | Ab240983 |
| CD68 | BX052 | Abcam | Ab237968 |
| CYP26B1 | BX054 | ProteinTech | 21555-1-AP |
| PIEZO2 | BX055 | ThermoFisher | PA5-72975 |
CD31: Cluster of Differentiation 31; CK19: Cytokeratin 19; CD4: Cluster of Differentiation 4; YAP: Yes-Associated Protein; CD68: Cluster of Differentiation 68; MGP: Matrix Gla Protein; CD45: Protein Tyrosine Phosphatase Receptor Type C; CD8: Cluster of Differentiation 8; CD20: Membrane Spanning 4-Domain A1; HLA-DR: Major Histocompatibility Complex Class II; CD26: Dipeptidylpeptiidase IV; PDGFRa: Platelet Derived Growth Factor Receptor Alpha; COLIV: Collagen Type IV; aSMA: Alpha Smooth Muscle Actin; Ki67: Marker of Proliferation Ki-67; VIM: Vimentin; PANCK: Pan-Cytokeratin; FAK: Focal Adhesion Kinase; MYH11: Myosin Heavy Chain 11; ADIPOQ: Adiponectin, C1Q and Collagen Domain Containing; PLIN1: Perilipin 1; CALD1: Caldesmon 1; TAGLN: Transgelin; PDGFRB: Platelet Dervied Growth Factor Receptor Beta; DES: Desmin; PIEZO1: Piezo Type Mechanosensitive Ion Channel Component 1; PIEZO2: Piezo Type Mechanosensitive Ion Channel Component 2; COL1: Collagen Type I; CYP26B1: Cytochrome P450 Family 26 Subfamily B Member 1, SCA1: SpinoCerebellar Ataxia Type 1, CD200: Cluster of Differentiation 200; LEF1: Lymphoid Enhancer Binding Factor 1, DLK1: Delta Like non-canonical Notch Ligand 1, SOX9: SRY-box transcription factor 9.