Table 2.
Studies included for the analysis of human liver transcriptomic data from publicly available datasets
| GEO ID | Type | Samples | |||||
|---|---|---|---|---|---|---|---|
| Fetal | Pediatric | Adult | |||||
| GSE111845 | RNAseq | 10 | 10 | 10 | |||
| GSE61276 | Microarray | 10 | - | 10 | |||
| F1 (5–6 PCW) | F2 (7–9 PCW) | F3 (12–17 PCW) | Adult | ||||
| E-MTAB-8210 | scRNAseq | 3 | 7 | 4 | 3 | ||
| Non-Tumor | Fibrosis | Chronic Hepatitis | Cirrhosis | Dysplastic Nodules | HCC | ||
| GSE148355 | RNAseq | 16 | 20 | - | 10 | 17 | 65 |
| GSE114564 | RNAseq | 15 | - | 20 | 10 | 10 | 63 |
| GSE77509 | RNAseq | 20 | - | - | - | - | 40 (20) |
| GSE6764 | Microarray | 10 | - | - | 13 | 17 | 35 |
| GSE102079 | Microarray | 14/91 | - | - | - | - | 152 |
| GSE14520 (GPL3921) | Microarray | 220 | - | - | - | - | 225 |
| GSE89377 | Microarray | 13 | - | 20 | 12 | 22 | 40 |
| GSE202069 | RNAseq | - | - | - | - | - | 17 |
| TCGA-LIHC | RNAseq | 50 | - | - | - | - | 371 |
| LIRI-JP | RNAseq | 197 | - | - | - | - | 203 |
| Cell Lines | |||||||
| GSE97098 | RNAseq | 28 | |||||
PCW, post-conception weeks