Table 1.
Characteristics of datasets for FedProt evaluation with LC–MS/MS measurement overview
| A. Bacterial dataset | ||||
|---|---|---|---|---|
| Groupsa | Sample type | Setup | ||
| M9 pyruvate | M9 glucose | |||
| Lab A | 10 | 10 | Cell pellet | Evosep One – Exploris 480 |
| Lab B | 10 | 9 | Cell pellet | nanoElute – timsTOF Pro |
| Lab C | 9 | 10 | Cell lysate | Ultimate3000 – Orbitrap Fusion Lumos |
| Lab D | 10 | 10 | Cell lysate | EASY-nLC 1200 – Exploris 480 |
| Lab E | 10 | 10 | Cell lysate | Ultimate3000 – QE-HFX |
| B. Human serum dataset | ||||
|---|---|---|---|---|
| Groups | Sample type | Set-up | ||
| Control | FSGS | |||
| Center 1 | 10 | 10 | Serum | EASY-nLC 1200 – QExactive HF |
| Center 2 | 10 | 10 | Serum | Ultimate3000 nano – Exploris 480 |
| Center 3 | 10 | 10 | Serum | EASY-nLC 1200 – Orbitrap Fusion Lumos |
M9 is the medium used to grow E. coli. aThe number of samples in each cohort in each condition.