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. 2025 Aug 24;8:543. doi: 10.1038/s41746-025-01955-x

Table 7.

Graph embedding algorithms evaluation

Model Micro-F1 Macro-F1 Weighted-F1
DeepWalk45 0.59 0.29 0.50
Node2Vec46 0.60 0.30 0.51
Walklets47 0.75 0.43 0.70
SocioDim48 0.77 0.51 0.76
RandNE49 0.53 0.24 0.44
NetMF50 0.74 0.49 0.73
GLEE42 0.78 0.54 0.77

The goal is to select algorithms that maximize the preservation of our knowledge graph structure and feature information, GLEE performs the best.