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. 2025 Aug 21;15(36):29544–29559. doi: 10.1039/d5ra04955e

Table 3. The binding scores, RMSD values, distance, and receptor interactions of the most promising compounds (1, 3, 5, 6, 7, 8, and 9) were compared to the docked ligand [Acarbose and Evogliptin] and 5J7 as a reference for anti-diabetic evaluation.

Comp Score (kcal mol−1) RMSD Interacting residues
Ligand Receptor Interactions Distance (Å) E (kcal mol−1)
5J7 (reference) −9.04865932 1.966 O 28 ND1 HIS 305 (A) H-acceptor 2.93 −2.5
O 62 OD1 ASP 300 (A) H-donor 2.85 −2.0
C 75 OE2 GLU 233 (A) H-donor 3.41 −0.5
Acarbose −8.39953136 1.470 O 81 OE1 GLU 233 (A) H-donor 3.27 −1.3
C 55 5-Ring TRP 59 (A) H-pi 3.92 −0.6
C 68 6-Ring TYR 62 (A) H-pi 4.49 −0.7
O 86 5-Ring HIS 101 (A) H-pi 4.24 −1.0
Evogliptin −6.45007515 1.603 C 36 6-Ring TYR 62 (A) H-pi 4.24 −1.0
1 −6.04776144 1.365 O 11 OE2 GLU 233 (A) H-donor 2.70 −1.7
N 5 6-Ring TYR 62 (A) H-pi 3.85 −0.8
3 −5.58074379 0.529 N 35 6-Ring TYR 62 (A) H-pi 4.20 −1.8
5 −5.26979733 1.554 N 11 OE2 GLU 233 (A) H-donor 2.98 −4.5
N 33 OG1 THR 163 (A) H-donor 3.04 −1.5
N 16 NE2 HIS 299 (A) H-acceptor 3.63 −1.0
6 −6.6096797 1.217 N 59 OE2 GLU 233 (A) H-donor 2.99 −3.4
C 49 5-Ring TRP 59 (A) H-pi 4.23 −0.5
7 −5.78755617 1.989 N 43 OE1 GLU 233 (A) H-donor 2.97 −3.9
8 −5.62768507 1.188 N 13 OE2 GLU 233 (A) H-donor 2.90 −8.5
O 30 NH2 ARG 195 (A) H-acceptor 2.99 −2.4
N 16 6-Ring TYR 62 (A) H-pi 4.20 −0.8
9 −5.00731277 0.991 N 23 OE2 GLU 233 (A) H-donor 2.88 −8.8