Table 4. Theoretical binding energies of the TAF with calf thymus DNA sequence complex involved in dockinga.
| PDB ID | ΔG (kcal mol−1) | E 1 (kcal mol−1) | E 2 (kcal mol−1) | E 3 (kcal mol−1) | E 4 (kcal mol−1) |
|---|---|---|---|---|---|
| 1D29 | −7.75 | −8.64 | −0.28 | 0.89 | −0.28 |
| 3EY0 | −7.61 | −8.50 | −0.29 | 0.89 | −0.29 |
ΔG – total binding free energy estimated (E1 + E2 + E3 − E4); E1 – total intermolecular energy (sum of van der Waals, hydrogen bond, desolvation, electrostatic energies); E2 – total internal energy; E3 – torsional free energy; E4 – unbound system energy.