Table 4. Rationally designed derivatives (D1–D5) of the four lead resin acids—callitrisic, levopimaric, palustric and pimaric acids. For each analog, the parent scaffold, point of modification, appended functional group, and intended purpose (e.g., classical CA zinc-binding headgroup, solubility enhancement, or conjugation handle) are listed. Designs were positioned on solvent-exposed regions indicated by our binding model to preserve the hydrophobic core contacts. Abbreviations: CA, carbonic anhydrase; SA, sulfonamide; UR, ureido; PEG2–OH, 2-carbon polyethylene glycol alcohol; Az, azide “click” handle; p-FBnAm, para-fluorobenzyl amide.
| ID | Parent acid | Modification site | New group |
|---|---|---|---|
| D1 | Callitrisic | –COOH → –CONH–SO2NH2 (primary sulfonamide) | Classic CA zinc-binding head; boosts potency/selectivity |
| D2 | Callitrisic | –COOH → ureido (–CONH–NH–CO–NH2) | Alternative CA-binding motif; H-bonding network |
| D3 | Levopimaric | –COOH esterified with –O–(CH2)2–OH | Raise solubility; potential prodrug; keeps hydrophobic core |
| D4 | Palustric | Side-chain alkene click-handle –CONH–(CH2)3–N3 | Enables conjugation/imaging (CuAAC) |
| D5 | Pimaric | –COOH → para-fluorobenzyl amide | Adds π–π stacking, tweaks electronics, improves stability |