Table 1. Genome assembly statistics of P. paneum OM1 and seven other fungal strains.
|
Genome
feature |
P. paneum OM1 | P. griseofulvum PG3 | P. expansum d1 | P. expansum MD-8 | P. expansum ATCC 24692 | P. digitatum Pd1 | P. chrysogenum Wisconsin 54-1255 | A. clavatus NRRL 1 |
|---|---|---|---|---|---|---|---|---|
| Sequencing technology | Oxford nanopore | Illumina | Illumina | Illumina | Illumina | Roche 454 | NR | NR |
| Genome size (Mb) | 27.16 | 29.14 | 32.07 | 32.36 | 32.45 | 26.05 | 32.22 | 27.86 |
| Sequencing coverage (x) | 127 | 270 | 605 | 473 | 119 | 24 | 9.8 | 1 |
| Number of contigs | 6 | 92 | 270 | 377 | 136 | 561 | 242 | 231 |
| Number of scaffolds | 4 | 92 | 249 | 345 | 12 | 53 | 49 | 143 |
| Number of scaffolds (≥ 100 kb) | 4 | 14 | 80 | 89 | 8 | 26 | 1NR | 16 |
| N50 (bp) | 7,466,314 | 2,267,136 | 360,559 | 376,691 | 5,330,000 | 1,533,507 | 1NR | 2,493,640 |
| GC (%) | 48.8 | 47.3 | 47.6 | 47.5 | 47.4 | 48.5 | 48.9 | 49.2 |
| Number of protein-coding genes | 10,679 | 9,629 | 11,048 | 11,060 | 11,807 | 8,946 | 7,328 | 9,121 |
Notes.
The genome assembly data of seven fungal strains were obtained from the information publicly available on NCBI, MycoCosm, and EnsemblFungi.
NR indicates Not Reported.