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. 2002 Mar;68(3):1351–1357. doi: 10.1128/AEM.68.3.1351-1357.2002

TABLE 1.

Primers and fluorescent probes used in this work

Primer or probe Sequencea Gene location (accession no.)
tubCf 5′-CGGAAACTGGCCGTCAATAT-3′ 1252-1271 (M17520.1)
tubCr 5′-GGGCAAACCCGACCATAAA-3′ 1297-1315 (M17520.1)
ptubC 5′-6FAM-TCCCTTCCCGCGGTTGCATTT-TAMRA-3′ 1275-1295 (M17520.1)
Actinf 5′-TTCCGTGCTTGTCCCTGAAC-3′ 462-481 (M22869.1)
Actinr 5′-AAGGACGGGTAGGTCGTTGC-3′ 505-524 (M22869.1)
Pactin 5′-VIC-CTCGCCTGGTCTCGCCGCTGT-TAMRA-3′ 483-502 (M22869.1)
AtrAf 5′-TCCCTCGCATGACAATCC-3′ 1542-1560 (Z68904.1)
AtrAr 5′-GAGAGAGAATGAGGCGGAGTTG-3′ 1596-1618 (Z68904.1)
pAtrA 5′-TET-ACGATGACCTAGAAGACGCAACCCTTGAC-TAMRA-3′ 1565-1594 (Z68904.1)
AtrBf 5′-CGCTTTGCTATCTAACGAGTTTCAC-3′ 2736-2761 (Z68905.1)
AtrBr 5′-CGGCGGGCACAAGGT-3′ 2789-2804 (Z68905.1)
patrB 5′-VIC-AAGATCATTCCCTGCGTGGGCACC-3′ 2764-2788 (Z68905.1)
AtrCf 5′-TGGCATCCCGCTACATGAT-3′ 3954-3973 (AF082072.1)
AtrCr 5′-GGGTTGGGTTCTGGGTGAC-3′ 4009-4028 (AF082072.1)
pAtrC 5′-VIC-CCGTGCCCGGATCGGCCT-TAMRA-3′ 3990-4008 (AF082072.1)
AtrDf 5′-CATCCGATCTCGACGGAAAA-3′ 3550-3569 (AF071411.1)
AtrDr 5′-GCGCTGGAAACAGACTTGTG-3′ 3616-3597 (AF071411.1)
pabcD 5′-TET-CAACCATTGACCGCACGGGCA-TAMRA-3′ 3574-3594 (AF071411.1)
a

Abbreviations: 6FAM, 6-carboxyfluorescein; TAMRA, 6-carboxy-N,N,N′,N′-tetramethylrhodamine; VIC, trademark product from Applied Biosystems; TET, 6-carboxy-4,7,2′,7′-tetrachlorofluorescein.