Table 1.
List of selected genes that may be responsible for SNP- and MT-mediated postharvest quality of okra fruit
| Gene id | Gene name | Log2 Fold-Change | Gene description | |||
|---|---|---|---|---|---|---|
| Control vs. FH | MT vs. Control | SNP vs. Control | MT + SNP vs. Control | |||
| Antioxidant defense-related DEGs | ||||||
| TRINITY_DN5801_c0_g3 | CAT2 | −0.74 | - | - | - | Catalase isozyme 2 |
| TRINITY_DN7862_c0_g1 | CAT2 | −0.67 | - | - | - | Catalase isozyme 2 |
| TRINITY_DN9274_c0_g1 | POD5 | −2.55 | - | - | - | Peroxidase 5 |
| TRINITY_DN8559_c0_g1 | POD11 | 11.26 | - | −2.80 | - | Peroxidase 11 |
| TRINITY_DN3291_c0_g1 | POD17 | −1.72 | - | 1.37 | - | Peroxidase 17 |
| TRINITY_DN8861_c0_g1 | POD21 | −2.87 | - | 2.97 | - | Peroxidase 21 |
| TRINITY_DN15109_c0_g1 | POD25 | 2.66 | - | −1.73 | - | Peroxidase 25 |
| TRINITY_DN71851_c0_g1 | POD25 | 3.19 | - | - | - | peroxidase 25 |
| TRINITY_DN5145_c0_g1 | POD31 | 1.89 | - | −1.55 | - | peroxidase 31-like |
| TRINITY_DN34030_c0_g1 | POD40 | 3.96 | - | - | - | peroxidase 40 precursor |
| TRINITY_DN22974_c0_g1 | POD42 | −1.13 | - | −1.53 | 0.72 | Peroxidase 42 |
| TRINITY_DN26603_c0_g1 | POD54 | −2.26 | - | - | - | Peroxidase 54 |
| TRINITY_DN216153_c0_g1 | POD54 | 4.31 | - | −4.58 | - | Peroxidase 54 |
| TRINITY_DN105024_c0_g1 | POD55 | 2.29 | - | −2.83 | - | Peroxidase 55 |
| TRINITY_DN8076_c0_g1 | POD64 | −3.71 | - | - | - | PREDICTED: peroxidase 64-like |
| TRINITY_DN9372_c0_g1 | POD64 | −1.57 | - | - | - | Peroxidase 64-like |
| TRINITY_DN1208_c1_g3 | POD66 | −5.16 | - | - | - | peroxidase 66 |
| TRINITY_DN10147_c1_g1 | POD73 | −2.71 | - | - | - | Peroxidase 73 |
| TRINITY_DN14032_c0_g1 | PODP7 | 1.31 | - | −2.07 | - | PREDICTED: peroxidase P7-like isoform X2 |
| TRINITY_DN7047_c0_g1 | PODP7 | - | - | −2.00 | - | PREDICTED: peroxidase P7-like |
| TRINITY_DN3376_c0_g1 | APX1 | 0.68 | - | - | - | L-ascorbate peroxidase 1, cytosolic |
| TRINITY_DN147219_c0_g1 | MDHAR | −1.42 | - | 2.27 | −0.76 | Monodehydroascorbate reductase |
| TRINITY_DN1764_c0_g1 | MDHAR | −0.86 | - | - | - | Monodehydroascorbate reductase |
| TRINITY_DN465_c0_g1 | MDHAR | 0.10 | −0.59 | 0.96 | - | Monodehydroascorbate reductase |
| TRINITY_DN2663_c0_g1 | MDHAR3 | −1.38 | - | 1.35 | - | Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like |
| TRINITY_DN25863_c0_g2 | GST | −2.54 | - | 1.59 | - | Glutathione s-transferase-like protein |
| TRINITY_DN40077_c0_g1 | GST | 4.10 | - | - | - | Glutathione S-transferase family protein isoform 1 |
| TRINITY_DN6347_c0_g2 | GST | −2.02 | - | - | - | PREDICTED: glutathione S-transferase zeta class-like |
| TRINITY_DN297_c0_g1 | GST1 | 2.13 | - | - | - | Glutathione S-transferase family protein isoform 1 |
| TRINITY_DN29445_c0_g2 | GST7 | 2.17 | - | - | - | Putative Glutathione S-transferase tau 7 |
| TRINITY_DN2034_c0_g1 | GSTF9 | 0.85 | - | −0.78 | - | Glutathione S-transferase F9-like |
| TRINITY_DN4089_c0_g1 | GST-DHAR4 | 1.69 | - | - | - | Putative glutathione S-transferase DHAR4 |
| TRINITY_DN6588_c1_g1 | GST-PARB | −1.74 | - | - | - | Glutathione S-transferase PARB |
| TRINITY_DN86442_c0_g1 | GSTU7 | −2.00 | - | 3.13 | - | Glutathione S-transferase U7 |
| TRINITY_DN5794_c0_g1 | Frx2 | −2.08 | - | 1.41 | - | Ferredoxin-2 |
| TRINITY_DN18174_c0_g1 | Frx3 | −1.80 | - | - | - | Ferredoxin-3 |
| Chlorophyll metabolism-related DEGs | ||||||
| TRINITY_DN32450_c0_g1 | Lhcb | −3.01 | - | 2.78 | - | Chlorophyll a-b binding protein, chloroplastic-like |
| TRINITY_DN13078_c0_g1 | Lhcb3 | −2.12 | - | 2.15 | - | Chlorophyll a-b binding protein 3 |
| TRINITY_DN34119_c0_g1 | Lhcb4.2 | - | - | 2.19 | - | Chlorophyll a-b binding protein CP29.2 |
| TRINITY_DN16265_c0_g1 | Lhcb5 | −1.56 | - | 2.45 | - | PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic |
| TRINITY_DN16878_c1_g1 | Lhcb5 | - | - | 3.94 | - | PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like |
| TRINITY_DN48304_c0_g1 | Lhcb5 | - | −1.65 | 2.02 | - | chlorophyll a-b binding protein of LHCII type 1-like |
| TRINITY_DN12532_c0_g1 | Lhcb5 | - | - | 2.60 | - | PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like |
| TRINITY_DN1071_c0_g1 | Lhcb6 | - | - | 1.74 | - | Chlorophyll a-b binding protein 6, chloroplastic |
| TRINITY_DN14406_c0_g1 | Lhcb6 | - | - | 2.36 | - | PREDICTED: chlorophyll a-b binding protein 6, chloroplastic |
| TRINITY_DN54967_c0_g1 | Lhcb6 | −2.68 | - | 2.33 | - | Chlorophyll a-b binding protein |
| TRINITY_DN127_c0_g1 | Lhcb7 | −1.90 | −1 | 2.02 | - | PREDICTED: chlorophyll a-b binding protein 7, chloroplastic |
| TRINITY_DN10806_c0_g1 | Lhcb151 | - | - | 1.76 | - | PREDICTED: chlorophyll a-b binding protein 151, chloroplastic |
| TRINITY_DN9711_c1_g1 | ChlB | 1.28 | - | - | - | Light-independent protochlorophyllide reductase subunit B |
| TRINITY_DN9711_c1_g1 | ChlB | 1.28 | - | - | - | Light-independent protochlorophyllide reductase subunit B |
| TRINITY_DN11720_c0_g2 | SGR | 8.32 | - | - | - | Protein STAY-GREEN |
| TRINITY_DN1344_c0_g1 | HO1 | 3.12 | - | - | - | Heme oxygenase 1 |
| TRINITY_DN1484_c0_g1 | HO1 | −1.26 | - | - | - | Heme oxygenase-like, multi-helical isoform 1 |
| TRINITY_DN90537_c0_g1 | HY2 | −1.27 | - | - | - | Phytochromobilin:ferredoxin oxidoreductase |
| TRINITY_DN5896_c0_g1 | GGDR | −1.92 | - | - | - | Geranylgeranyl diphosphate reductase |
| TRINITY_DN11844_c0_g1 | POR | - | - | 2.30 | - | Protochlorophyllide reductase |
| TRINITY_DN13487_c0_g1 | POR | −2.27 | - | - | - | Protochlorophyllide reductase |
| TRINITY_DN10593_c0_g1 | POR-like | −2.76 | - | 2.13 | - | PREDICTED: protochlorophyllide reductase-like |
| TRINITY_DN4391_c0_g1 | PAO | - | - | −0.97 | - | Pheophorbide a oxygenase |
| TRINITY_DN8481_c0_g1 | HCAR | - | - | 1.56 | - | 7-hydroxymethyl chlorophyll a reductase |
| Transcription factors and protein kinases | ||||||
| TRINITY_DN1096_c0_g1 | RAP2-4 | −0.73 | - | - | - | Ethylene-responsive transcription factor RAP2-4 |
| TRINITY_DN11501_c1_g1 | DREB1A | 4.69 | - | - | - | Dehydration-responsive element-binding protein 1 A |
| TRINITY_DN6395_c0_g1 | ERF3 | - | - | 0.98 | - | Ethylene-responsive transcription factor 3 |
| TRINITY_DN8242_c0_g1 | ERF4 | 1.27 | - | - | - | Ethylene-responsive transcription factor 4 |
| TRINITY_DN3772_c0_g1 | ERF4 | 2.13 | - | - | - | PREDICTED: ethylene-responsive transcription factor 4-like |
| TRINITY_DN3772_c0_g2 | ERF4 | 1.18 | - | - | - | PREDICTED: ethylene-responsive transcription factor 4-like |
| TRINITY_DN8058_c0_g1 | ERF5 | - | - | 2.13 | - | Ethylene-responsive transcription factor 5 |
| TRINITY_DN19693_c0_g1 | ERF9 | 2.74 | - | - | - | PREDICTED: ethylene-responsive transcription factor 9 |
| TRINITY_DN12966_c0_g1 | ERF011 | 1.13 | - | - | - | ERF011 protein |
| TRINITY_DN3805_c0_g1 | ERF017 | 11.41 | - | - | - | ERF017 protein |
| TRINITY_DN8459_c0_g1 | ERF017 | 2.77 | - | - | - | ERF017 protein |
| TRINITY_DN9173_c0_g1 | ERF025 | 3.29 | - | - | - | ERF025 protein |
| TRINITY_DN114837_c0_g1 | ERF27 | - | - | −3.88 | - | ERF027 protein |
| TRINITY_DN214995_c0_g1 | ERF061 | 1.15 | - | - | - | ethylene-responsive transcription factor ERF061-like |
| TRINITY_DN152802_c0_g1 | ERF112 | 8.38 | - | - | - | ERF112 protein |
| TRINITY_DN6479_c0_g1 | ERF112 | 1.96 | - | - | - | ERF112 protein |
| TRINITY_DN2798_c0_g1 | ERF113 | 1.12 | - | - | - | ERF113 protein |
| TRINITY_DN8359_c0_g1 | ERF1A | 3.78 | - | - | - | Ethylene-responsive transcription factor 1A |
| TRINITY_DN6812_c0_g1 | CRF1 | −4.76 | - | - | - | PREDICTED: ethylene-responsive transcription factor CRF1 |
| TRINITY_DN66856_c0_g1 | CRF2 | 1.50 | - | - | - | Ethylene-responsive transcription factor CRF2 |
| TRINITY_DN6812_c0_g2 | CRF3 | 3.01 | - | - | - | Ethylene-responsive transcription factor CRF3 |
| TRINITY_DN8882_c0_g1 | TOE3 | −1.47 | - | - | - | AP2-like ethylene-responsive transcription factor TOE3 |
| TRINITY_DN9903_c0_g1 | DREB1 | −1.21 | - | - | - | PREDICTED: ethylene-responsive transcription factor RAP2-1-like |
| TRINITY_DN9237_c0_g1 | DREB2E | 1.90 | - | - | - | Dehydration-responsive element-binding protein 2E |
| TRINITY_DN5597_c0_g1 | WRKY4 | - | −1.54 | - | - | PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 4 |
| TRINITY_DN8258_c0_g1 | RAX3 | - | −1.20 | - | - | Transcription factor RAX3 |
| TRINITY_DN13605_c0_g1 | RAP2-3 | - | - | 1.18 | - | PREDICTED: ethylene-responsive transcription factor RAP2-3 |
| TRINITY_DN6318_c0_g1 | RAP2-10 | - | - | 0.93 | - | ethylene-responsive transcription factor RAP2-10-like |
| TRINITY_DN25001_c0_g1 | bHLH106 | - | - | - | 3.25 | bHLH106 protein |
| TRINITY_DN3188_c0_g1 | NAC90 | - | - | - | −1.88 | PREDICTED: NAC domain-containing protein 90-like |
| TRINITY_DN1740_c0_g1 | SRF6 | - | - | - | 0.93 | Protein STRUBBELIG-RECEPTOR FAMILY 6 |
| TRINITY_DN16448_c0_g1 | SRF7 | - | - | - | 0.89 | Protein STRUBBELIG-RECEPTOR FAMILY 7 |
| TRINITY_DN21988_c0_g1 | PMEI | - | - | - | 1.76 | invertase/pectin methylesterase inhibitor family protein |
| TRINITY_DN41399_c0_g1 | PTI1-3 | - | - | - | −1.05 | PTI1-like tyrosine-protein kinase 3 |