Table 7.
Bioinformatic analysis of tetK gene sequences (generated in this study) obtained from Comprehensive Antibiotic Resistance Database (CARD) using BLASTX-Search a nucleotide sequence against all protein sequences
| Bitscore* | ARO tag** | Name | E-value*** | Identity | Species | GenBank accession(s) |
|---|---|---|---|---|---|---|
| 85 | ARO:3000178 | tet(K) | 5.7896e-22 | 100 | MRSA | PP315279.1 |
| 126 | ARO:3000178 | tet(K) | 5.99428e-37 | 97 | MRSA | PP315280.1 |
| 85 | ARO:3000178 | tet(K) | 5.7896e-22 | 100 | MRSA | PP315282.1 |
| 85 | ARO:3000178 | tet(K) | 5.7896e-22 | 100 | MRSA | PP315283.1 |
| 84 | ARO:3000178 | tet(K) | 1.65055e-21 | 98 | MRSA | PP315284.1 |
| 83 | ARO:3000178 | tet(K) | 3.56468e-21 | 98 | MRSA | PP315285.1 |
| 84 | ARO:3000178 | tet(K) | 1.01716e-21 | 88 | MRSA | PP315286.1 |
*The Bitscore is a normalized measure of sequence similarity (a higher bitscore means better alignment). ** Antibiotic Resistance Ontology (ARO) is a comprehensive and structured vocabulary specifically designed to represent antibiotic resistance genes, mutations, and phenotypes. ***The expectation value (E-value) is a statistical measure that describes the number of hits one can"expect"to find by chance in a database of a particular size that has a score equal to or better than the observed bitscore