Table 6. Comparison of the chromosomal properties of Pediococcus pentosaceus strains registered in the NCBI database.
Chromosomal properties | Strain | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SMFM2016_NK1 | SMFM2016_YK1 | SMFM2016_WK1 | ATCC 25745 | GDIA S001 | JQI-7 | KCCM 40703 | SL001 | SL4 | SRCM 100194 | SRCM 100892 | SRCM 102734 | SRCM 102736 | SRCM 102738 | SRCM 102739 | SRCM 102740 | SS1-3 | Wikim20 | |
Genome size (Mb) | 1.85 | 1.79 | 1.72 | 1.83 | 1.83 | 1.73 | 1.76 | 1.92 | 1.79 | 1.87 | 2.00 | 1.71 | 1.81 | 1.88 | 1.90 | 1.88 | 1.84 | 1.83 |
GC content (%) | 38.26 | 37.31 | 36.76 | 37.40 | 37.10 | 37.20 | 37.20 | 37.44 | 37.30 | 37.38 | 37.27 | 37.40 | 37.39 | 37.41 | 37.37 | 37.41 | 37.28 | 37.26 |
tRNA | 55 | 57 | 55 | 55 | 56 | 56 | 55 | 56 | 51 | 55 | 56 | 56 | 56 | 56 | 56 | 56 | 55 | 55 |
rRNA | 15 | 15 | 15 | 15 | 15 | 5 | 15 | 15 | 15 | 15 | 15 | 15 | 15 | 15 | 15 | 15 | 15 | 15 |
ANI (%) | ||||||||||||||||||
NK1 | - | 98.82 | 98.77 | 98.88 | 98.87 | 98.91 | 98.91 | 98.85 | 98.82 | 98.86 | 98.66 | 98.95 | 98.95 | 98.90 | 98.90 | 98.90 | 99.93 | 98.85 |
YK1 | 98.82 | - | 98.91 | 99.13 | 99.01 | 98.94 | 99.01 | 98.89 | 98.98 | 99.05 | 98.74 | 99.69 | 98.97 | 99.12 | 99.12 | 99.12 | 99.02 | 99.07 |
WK1 | 98.77 | 98.91 | - | 98.85 | 98.89 | 99.02 | 98.96 | 99.03 | 99.43 | 98.79 | 98.81 | 98.97 | 99.06 | 98.91 | 98.91 | 98.91 | 98.81 | 98.92 |
Source | Kimchi | Kimchi | Kimchi | - | Plant feed material | Fermented dairy | Sakemash | Soil | Sausages | Food | Food | Doenjang | Chong-gugjang | Chong-gugjang | Chong-gugjang | Chong-gugjang | Adult feces | Kimchi |
Location | Korea | Korea | Korea | - | China | China | Japan | China | Denmark | Korea | Korea | Korea | Korea | Korea | Korea | Korea | Korea | Korea |
GC, guanine + cytosine; ANI, Average Nucleotide Identity.