Table 2.
Top 20 OGs with highest number of positively selected sites per nucleotide
Most similar gene | OG | PSS per nucleotide1 | NSS per nucleotide2 | Family | Pangenome category | Duplication mechanism |
---|---|---|---|---|---|---|
AT1G65250 | N0.HOG0000002_2 | 0.146137787 | 0.096033403 | RLCK | Shell | Proximal |
AT1G65250 | N0.HOG0000002_1 | 0.143141153 | 0.11332008 | RLCK | Almost Core | Proximal |
AT1G35710 | N0.HOG0000039_1 | 0.075114679 | 0.123853211 | LRR | Core | Dispersed |
AT1G67470/ZRK12 | N0.HOG0001002_1 | 0.070539419 | 0.03526971 | RLCK | Almost Core | Dispersed |
AT4G20450 | N0.HOG0000035_1 | 0.06043956 | 0.113186813 | MLRR | Core | Dispersed |
AT4G11460/CRK30 | N0.HOG0000604 | 0.056865465 | 0.058252427 | CRK | Core | Tandem |
AT5G59670 | N0.HOG0000020_2 | 0.050561798 | 0.033707865 | MLRR | Shell | Tandem |
AT1G65190 | N0.HOG0000007_2 | 0.049528302 | 0.044811321 | RLCK | Shell | Proximal |
AT1G66910 | N0.HOG0000029 | 0.049180328 | 0.052693208 | LRK10L | Shell | Tandem |
AT1G69730 | N0.HOG0000041_1 | 0.046172539 | 0.059538275 | WAKL | Core | Dispersed |
AT1G65250/ZRK14 | N0.HOG0000002_3 | 0.044871795 | 0.051282051 | RLCK | Cloud | Proximal |
AT1G67520 | N0.HOG0000995 | 0.040189125 | 0.027186761 | SRK | Almost Core | Dispersed |
AT1G65190/ZRK13 | N0.HOG0000007_1 | 0.035629454 | 0.03087886 | RLCK | Almost Core | Dispersed |
AT1G21250/WAK1 | N0.HOG0000147 | 0.035326087 | 0.020380435 | WAKL | Core | Tandem |
AT1G67000 | N0.HOG0000056_1 | 0.034058657 | 0.051087985 | LRK10L | Core | Proximal |
AT1G17910 | N0.HOG0000135 | 0.030864198 | 0.062962963 | WAKL | Core | Dispersed |
AT4G04510/CRK38 | N0.HOG0000592 | 0.030769231 | 0.047692308 | CRK | Core | Tandem |
AT2G14510 | N0.HOG0000012_1 | 0.029312289 | 0.065388952 | MLRR | Almost Core | Proximal |
AT5G38280/PR5K | N0.HOG0000970 | 0.028694405 | 0.055954089 | PR5L | Almost Core | Proximal |
AT4G11900 | N0.HOG0000609 | 0.028669725 | 0.033256881 | SRK | Core | Dispersed |
1Positively selected sites (PSS)
2Negatively selected sites (NSS)