ADMET |
Absorption, distribution, metabolism, excretion, and toxicity |
ADME |
Absorption, distribution, metabolism, and excretion |
QSAR |
Quantitative structure–activity relationship |
PBPK |
Physiologically based pharmacokinetics |
PAINS |
Pan-assay interference compounds |
cLogP |
Calculated partition coefficient |
LLE |
Lipophilicity ligand efficiency |
SFI |
Solubility forecast index |
PFI |
Property forecast index |
QM |
Quantum mechanics |
MNDO |
Modified neglect of diatomic overlap |
AM1 |
Austin model 1 |
PMn |
Parametric method n |
OMn |
Orthogonalization-corrected method n |
DFTB |
Density-functional tight-binding |
HF |
Hartree–Fock |
SCF |
Self-consistent field |
MPPT |
Møller–Plesset perturbation theory |
MP |
Møller–Plesset perturbation theory |
CI |
Configuration interaction theory |
CC |
Coupled cluster |
CASSCF |
Complete active space self-consistent field |
CASPT2 |
Complete active space perturbation theory |
MCSCF |
Multi-configurational self-consistent field |
DMRG |
Density matrix renormalization group method |
DFT |
Density functional theory |
DFT-D |
Dispersion-corrected DFT |
GGA |
Generalized gradient approximation |
MM |
Molecular mechanics |
OTC |
Organic cation transporter |
IUPAC |
International Union of Pure and Applied Chemistry |
SBP |
Structure-based pharmacophore |
PDB |
Protein Data Bank |
OATn |
Organic anion transporter n |
URAT1 |
Urate transporter 1 |
CoMFA |
Comparative Molecular Field Analysis |
HQSAR |
Hologram QSAR |
PAMPA |
Parallel artificial membrane permeation assay |
QSPR |
Quantitative structure-property relationship |
RMS |
Root mean square |
HIA |
Human intestinal absorption |
CV |
Cross-validation |
CCR |
Correct classification rate |
MCC |
Matthews correlation coefficient |
AAE |
Average Absolute Error |
RMSE |
Root mean square error |
AME |
Absolute mean error |
BBB |
Blood—brain barrier |
DMPC |
Dimyristoylphosphatidylcholine |
EGCG |
Epigallocatechin gallate |
MD |
Molecular dynamics |
MM- PBSA |
Molecular mechanics Poisson–Boltzmann surface area |
MM- GBSA |
Molecular mechanics generalized born surface area |
CADD |
Computer—aided drug design |
Kp |
Skin permeation coefficient |
PK |
Pharmacokinetics |
Smol |
Solvent—accessible molecular surface |
SASA |
Solvent—accessible molecular surface |
Vmol, hfob |
Total volume of molecules enclosed by solvent-accessible molecular surface |
log Swat |
Logarithm of aqueous solubility |
QPlogPo/w |
Predicted octanol/water partition coefficient |
logKhsa |
Logarithm of predicted binding constant to human serum albumin |
log B/B |
Logarithm of predicted blood/brain barrier partition coefficient |
BIP caco2 |
Predicted apparent Caco–2 cell membrane permeability |
MDCK |
Madin—Darby Canine Kidney |
QPMDCK |
Apparent MDCK cell permeability |
Indcoh |
Index of cohesion interaction in solids |
Glob |
Globularity descriptor |
QPpolrz |
Predicted polarizability |
VDss |
Volume of distribution at steady state |
HLM |
Human liver microsomal stability |
RLM |
Rat liver microsomal stability |
CLp |
Plasma clearance |
CLr |
Renal clearance |
MRT |
Mean retention time |
AUC |
Area under the curve |
DMPNN |
Deep message passing neural networks |
nHA |
Number of hydrogen acceptors |
nHD |
Number of hydrogen donors |
nRot |
Number of rotatable bonds |
nRing |
Number of rings |
MaxRing |
Number of atoms in the largest ring |
nHet |
Number of heteroatoms |
fChar |
Formal charge |
nRig |
Number of rigid bonds |
FLuc |
Firefly luciferase |
PPB |
Plasma protein binding |