AP3B1	Adaptor-related protein complex 3 subunit beta 1
ASC	Apoptosis-associated speck-like protein containing CARD
ASCC3	Activating signal co-integrator 1 complex subunit 3
CFTR	Cystic fibrosis transmembrane conductance regulator
COVID-19	Coronavirus disease 2019
CoVs	Coronaviruses
CRP	C-reactive protein
CTD	C-terminal domain
dsRNA	Double-stranded RNA
E	Envelope protein
ERGIC	Endoplasmic reticulum–Golgi intermediate compartment
ERK1/2	Extracellular signal-regulated kinases 1 and 2
G3BP1	GTPase-activating protein-binding protein 1
GADD34	Growth arrest and DNA damage-inducible 34
GSDMD	Gasdermin D
GSK-3	Glycogen synthase kinase-
HCoV	Human coronavirus
HDAC6	Histone deacetylases 6
HERC5	HECT and RLD domain containing E3 ubiquitin protein ligase 5
HLA	Human leukocyte antigen
ICU	Intensive care unit
IDRs	Intrinsically disordered regions
IFN-1	Type I interferon
IgG	Immunoglobulin G
IgM	Immunoglobulin M
IKKα	IκB kinase-α
IL	Interleukin
IMPDH2	Inosine monophosphate dehydrogenase 2
IP-10	IFN-gamma-inducible protein 10 kD
IRF	Interferon regulatory factor
ISG15	IFN-stimulated gene 15
JAK-STAT	Janus kinase-signal transducer and activator of transcription
KPNA	Karyopherin alpha
KPNB1	Karyopherin beta 1
LKR	Linking region
LLPS	Liquid–liquid phase separation
M	Membrane protein
MAPK	Mitogen-activated protein kinase
MASP-2	Mannan-binding lectin serine protease 2
MAVS	Mitochondrial antiviral signaling
MDA5	Melanoma differentiation-associated gene 5
MERS-CoV	Middle East respiratory syndrome coronavirus
MHV	Mouse Hepatitis Virus
MIS-C	Multisystem inflammatory syndrome
N	Nucleocapsid
NF-κB	Nuclear factor kappa B
NFKB1	NF-κB subunit 1
NFKBIA	NF-κB inhibitor alpha
NLRP3	NLR family pyrin domain containing-3
NLRs	NOD like receptors
NMD	Nonsense-mediated mRNA decay
NOD	Nucleotide-binding oligomerization domain proteins
NSPs	Nonstructural proteins
NTD	N-terminal domain
ORFs	Open reading frames
PAMPs	Pathogen-associated molecular patterns
PASC	Post-acute sequelae of SARS-CoV-2 infection
PCT	Procalcitonin
PDE4	Phosphodiesterase 4
PKM	Pyruvate kinase M
PLpro	Papain-like protease
poly(I:C)	Polyinosinic: polycytidylic acid
PRRs	Pattern recognition receptors
PTX3	Pentraxin 3
RAGE	Glycation end products
RAN	Ras-related nuclear protein
RdRp	RNA polymerase
RIG-I	Retinoic acid-inducible gene I
RISC	RNA-induced silencing complex
RLRs	RIG-I-like receptors
RNAi	RNA interference
RNP	Ribonucleoprotein
S	Spike protein
SAA	Serum amyloid A
SARS-CoV-2	Severe acute respiratory syndrome coronavirus 2
SARSr-CoV	SARS-related coronavirus
SCAP	SREBPs cleavage-activating protein
SGK1	Serum glucocorticoid regulated kinase 1
SGs	Stress granules
siRNA	Small interfering RNAs
SL	Stem-loop
SNX8	Sorting nexin 8
SR	Ser/Arg
SREBPs	Sterol regulatory element-binding proteins
SUMO	Small ubiquitin-like modifiers
T1D	Type 1 diabetes
T2D	Type 2 diabetes
TBK1	Tank-binding kinase 1
TCR	T cell receptor
TDP-43	Transactive response-binding protein 43 kDa
Th1	T helper type 1
TLR2	Toll-like receptor 2
TMAO	Trimethylamine N-oxide
TNF	Tumor necrosis factor
TNFR2	Tumor necrosis factor receptor 2
TRIM25	Tripartite motif protein 25
TRIM6	Tripartite motif protein 6
UBC9	Ubiquitin-conjugating enzyme 9
UPF1	UP-frameshift-1
VOCs	Variants of concern
YBX1	Y-box binding protein 1