TABLE 2.
Summary of all library clones classified by nearest cpn60 database neighbors
| Taxonomic group | Nearest cpn60 database neighbor | GenBank accession no. | No. of unique sequences | No. of clones | % DNA identity | % peptide identity (similarity) |
|---|---|---|---|---|---|---|
| CFB group | Bacteroides forsythus ATCC43037 | AJ006516 | 21 | 25 | 69-75 | 76 (86)-88 (92) |
| Bacteroides ovatus ATCC8483 | AF440236 | 29 | 68 | 66-83 | 69 (81)-97 (97) | |
| Bacteroides vulgatus ATCC8482 | AF440238 | 10 | 10 | 63-85 | 70 (82)-94 (95) | |
| Chryseobacterium gleum ATCC35910 | AF440235 | 3 | 17 | 67-68 | 68 (84)-73 (82) | |
| Prevotella bivia ATCC29303 | AF440233 | 87 | 274 | 72-79 | 84 (89)-89 (94) | |
| Prevotella intermedia ATCC25611 | AF440234 | 44 | 210 | 72-82 | 72 (84)-93 (96) | |
| Prevotella nigrescens ATCC33563 | AF441382 | 19 | 20 | 68-81 | 67 (83)-89 (93) | |
| Bacillus/Clostridium group | Bacillus coagulans CECT 12 | AF441379 | 5 | 6 | 68-70 | 72 (87)-74 (86) |
| Bacillus firmus CECT 14 | AF441380 | 1 | 2 | 66 | 65 (82) | |
| Bacillus halodurans | AP001508 | 11 | 42 | 63-67 | 64 (84)-71 (86) | |
| Bacillus psychrophilus CECT 4073 | AF441381 | 8 | 9 | 66-70 | 72 (86)-73 (88) | |
| Bacillus sp. MS | AB028452 | 3 | 3 | 68-69 | 72 (87) | |
| Clostridium acetobutylicum | M74572 | 2 | 3 | 66-68 | 65 (84)-73 (87) | |
| Clostridium difficile 79-685 | AF080547 | 14 | 42 | 61-65 | 64 (78)-74 (89) | |
| Clostridium perfringens | X62914 | 12 | 28 | 63-70 | 63 (83)-73 (88) | |
| Clostridium thermocellum ncib10682 | Z68137 | 88 | 210 | 65-75 | 67 (83)-82 (91) | |
| Enterococcus asini ss-1501 | AF245671 | 7 | 11 | 59-100 | 71 (85)-100 (100) | |
| Globicatella sanguinis ATCC51173 | AF441384 | 1 | 1 | 62 | 63 (83) | |
| Lactobacillus acidophilus T-13 | 2 | 5 | 99-100 | 99 (99)-100 (100) | ||
| Lactobacillus amylovorous ATCC33620 | 3 | 9 | 95-100 | 97 (99)-100 (100) | ||
| Lactobacillus jensenii ATCC25258 | 1 | 1 | 64 | 66 (83) | ||
| Lactococcus garvieae ATCC43921 | AF245674 | 1 | 4 | 63 | 66 (86) | |
| Pediococcus pentosaceus ATCC43200 | 5 | 10 | 84-98 | 95 (96)-100 (100) | ||
| Thermoanaerobacter brockii Rt8.G4 | U56021 | 2 | 16 | 68 | 75 (89) | |
| Proteobacteria gamma | Anaerobiospirillum succiniciproducens ATCC700195 | AF441383 | 12 | 88 | 79-80 | 83 (91)-86 (94) |
| Proteobacteria beta | Burkholderia vietnamiensis DSM 11319 | AF104908 | 1 | 1 | 82 | 87 (93) |
| Chlamydiales | Chlamydia muridarum | NP_296764 | 1 | 2 | 55 | 50 (68) |
| Spirochetes | Borrelia burgdorferi | NC_001318 | 3 | 5 | 62-67 | 65 (82)-67 (83) |
| Treponema pallidum | AE001188 | 1 | 1 | 64 | 71 (89) | |
| Total | 398 | 1,125 |