Table 2:
The characteristics of centromeric regions of the koi carp CC 4.0 assembly
| Chr | Start | End | Length | Gene number | Total repeats (%) | Tandem repeats (%) | Satellite (%) | Simple repeats (%) | DNA transposons (%) | LTR (%) |
|---|---|---|---|---|---|---|---|---|---|---|
| A1 | 6,983,780 | 7,145,651 | 161,872 | 2 | 81.31 | 60.02 | 0.00 | 0.00 | 13.97 | 54.67 |
| A2 | 10,552,693 | 11,217,077 | 664,385 | 0 | 99.80 | 97.66 | 34.62 | 81.27 | 0.17 | 10.08 |
| A3 | 31,879,419 | 33,636,405 | 1,756,987 | 15 | 94.48 | 47.82 | 0.52 | 0.01 | 23.15 | 19.92 |
| A4 | 21,620,000 | 21,850,000 | 230,001 | 0 | 99.51 | 91.05 | 38.95 | 68.48 | 0.20 | 19.43 |
| A5 | 32,599,339 | 34,476,588 | 1,877,250 | 4 | 95.23 | 78.50 | 37.86 | 38.32 | 19.57 | 18.10 |
| A6 | 11,508,992 | 12,370,832 | 861,841 | 0 | 97.97 | 93.41 | 32.03 | 76.06 | 1.69 | 18.41 |
| A7 | 11,516,427 | 13,371,720 | 1,855,294 | 5 | 97.97 | 92.18 | 32.58 | 34.23 | 4.61 | 12.75 |
| A8 | 24,955,543 | 25,632,915 | 677,373 | 2 | 98.40 | 92.83 | 10.21 | 81.02 | 1.14 | 5.10 |
| A9 | 29,694,335 | 30,547,340 | 853,006 | 4 | 90.68 | 74.76 | 73.54 | 0.00 | 9.05 | 6.00 |
| A10 | 22,177,277 | 22,829,639 | 652,363 | 0 | 99.55 | 77.31 | 32.70 | 84.61 | 0.16 | 5.35 |
| A11 | 4,746,905 | 5,590,589 | 843,685 | 0 | 96.67 | 69.23 | 69.71 | 29.75 | 0.32 | 0.52 |
| A12 | 17,378,483 | 18,406,913 | 1,028,431 | 2 | 95.07 | 84.22 | 46.46 | 50.69 | 8.00 | 3.01 |
| A13 | 4,680,000 | 4,900,000 | 220,001 | 0 | 90.67 | 89.23 | 78.71 | 11.37 | 0.00 | 0.13 |
| A14 | 23,400,000 | 23,430,000 | 30,001 | 0 | 94.82 | 91.60 | 63.58 | 0.00 | 1.36 | 0.00 |
| A15 | 19,963,423 | 21,668,624 | 1,705,202 | 2 | 95.22 | 82.73 | 42.88 | 51.19 | 8.10 | 5.78 |
| A16 | 14,555,504 | 14,717,133 | 161,630 | 1 | 88.13 | 21.87 | 0.00 | 0.00 | 86.60 | 1.64 |
| A17 | 3,716,890 | 4,150,698 | 433,809 | 3 | 99.97 | 62.40 | 1.99 | 0.00 | 0.26 | 29.53 |
| A18 | 11,933,667 | 12,590,459 | 656,793 | 2 | 95.02 | 89.14 | 27.61 | 78.28 | 2.76 | 9.08 |
| A19 | 2,597,145 | 3,177,452 | 580,308 | 2 | 96.10 | 94.22 | 21.03 | 87.82 | 1.42 | 6.54 |
| A20 | 23,703,082 | 24,668,971 | 965,890 | 5 | 88.97 | 69.01 | 66.65 | 0.01 | 8.92 | 14.15 |
| A21 | 16,706,975 | 17,545,549 | 838,575 | 1 | 95.78 | 88.81 | 16.58 | 82.56 | 3.99 | 8.95 |
| A22 | 19,320,532 | 19,979,681 | 659,150 | 0 | 98.32 | 96.21 | 39.26 | 79.33 | 0.77 | 10.22 |
| A23 | 1,348,620 | 2,293,930 | 945,311 | 1 | 100.00 | 98.81 | 57.69 | 52.65 | 0.00 | 17.76 |
| A24 | 16,939,420 | 17,124,316 | 184,897 | 4 | 88.30 | 7.58 | 0.00 | 0.00 | 48.20 | 42.52 |
| A25 | 18,285,858 | 19,188,655 | 902,798 | 0 | 97.68 | 91.44 | 69.84 | 24.54 | 0.86 | 7.48 |
| B1 | 15,950,000 | 16,440,000 | 490,001 | 0 | 99.88 | 95.39 | 17.92 | 53.81 | 0.00 | 0.00 |
| B2 | 22,023,874 | 22,670,773 | 646,900 | 6 | 90.32 | 72.71 | 73.80 | 0.00 | 11.34 | 5.13 |
| B3 | 35,614,767 | 35,952,947 | 338,181 | 0 | 97.14 | 91.61 | 88.11 | 17.69 | 5.52 | 1.09 |
| B4 | 33,360,418 | 33,527,013 | 166,596 | 0 | 99.39 | 97.34 | 0.00 | 0.00 | 0.33 | 0.00 |
| B5 | 11,034,427 | 12,148,201 | 1,113,775 | 1 | 94.60 | 83.31 | 72.53 | 9.66 | 7.56 | 6.22 |
| B6 | 16,740,439 | 17,090,269 | 349,831 | 1 | 96.16 | 93.15 | 0.00 | 0.00 | 1.17 | 15.35 |
| B7 | 12,778,416 | 13,657,366 | 878,951 | 1 | 99.24 | 71.75 | 29.25 | 74.78 | 0.70 | 14.21 |
| B8 | 2,758,449 | 3,284,545 | 526,097 | 2 | 93.21 | 86.27 | 55.03 | 49.18 | 2.79 | 14.59 |
| B9 | 4,331,995 | 4,452,008 | 120,014 | 0 | 75.44 | 42.01 | 0.00 | 0.00 | 30.85 | 36.93 |
| B10 | 2,079,927 | 2,213,557 | 133,631 | 0 | 95.15 | 78.41 | 0.54 | 50.58 | 5.73 | 50.44 |
| B11 | 21,120,000 | 22,240,000 | 1,120,001 | 0 | 99.59 | 99.48 | 38.50 | 81.92 | 0.09 | 3.06 |
| B12 | 15,879,559 | 17,438,428 | 1,558,870 | 6 | 95.57 | 85.19 | 39.74 | 67.93 | 8.58 | 9.30 |
| B13 | 25,361,200 | 26,195,054 | 833,855 | 4 | 86.95 | 56.30 | 50.37 | 11.58 | 18.10 | 12.22 |
| B14 | 23,790,000 | 24,620,000 | 830,001 | 1 | 94.93 | 12.26 | 13.52 | 79.35 | 0.76 | 18.71 |
| B15 | 11,292,907 | 11,974,689 | 681,783 | 3 | 97.13 | 2.80 | 11.85 | 0.00 | 12.58 | 1.83 |
| B16 | 24,380,000 | 25,210,000 | 830,001 | 1 | 99.77 | 98.92 | 38.71 | 84.91 | 0.19 | 7.52 |
| B17 | 23,480,000 | 24,130,000 | 650,001 | 1 | 96.47 | 77.13 | 62.70 | 43.82 | 0.18 | 9.51 |
| B18 | 10,339,546 | 11,415,040 | 1,075,495 | 8 | 89.51 | 59.19 | 44.49 | 0.59 | 24.08 | 17.50 |
| B19 | 26,221,041 | 26,766,840 | 545,800 | 1 | 98.22 | 90.31 | 72.13 | 30.39 | 2.66 | 5.52 |
| B20 | 4,550,000 | 4,900,000 | 350,001 | 0 | 98.63 | 98.56 | 27.54 | 95.27 | 0.13 | 0.00 |
| B21 | 8,310,000 | 9,300,000 | 990,001 | 0 | 97.21 | 2.16 | 50.79 | 74.63 | 0.00 | 7.16 |
| B22 | 36,566,575 | 37,323,917 | 757,343 | 1 | 97.09 | 92.48 | 23.27 | 67.10 | 5.81 | 22.69 |
| B23 | 1,540,000 | 2,230,000 | 690,001 | 0 | 93.82 | 0.15 | 21.82 | 81.62 | 0.26 | 7.16 |
| B24 | 16,763,174 | 17,679,191 | 916,018 | 3 | 94.99 | 84.22 | 37.99 | 54.93 | 10.27 | 7.39 |
| B25 | 1,437,545 | 2,512,481 | 1,074,937 | 0 | 98.86 | 96.59 | 39.80 | 76.90 | 2.90 | 1.04 |
Some repeat elements may partly include another element domain.