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. 2025 Aug 8;28(9):113329. doi: 10.1016/j.isci.2025.113329

Table 2.

Cohorts collected to construct AIGPS for skin cancer classification

Datasets Platform Technology Sample preservation methods Annotation data chip Healthy BCCa SCCb MCCc MELd Count
GSE02503 GPL96 Affymetrix Fresh tissue hgu133a.db 6 5 11
GSE03189 GPL96 Affymetrix – hgu133a.db 25 45 70
GSE06710 GPL96 Affymetrix Fresh tissue hgu133a.db 13 13
GSE07553 GPL570 Affymetrix Fresh tissue hgu133plus2.db 4 15 11 56 86
GSE13355 GPL570 Affymetrix Fresh tissue hgu133plus2.db 64 64
GSE14905 GPL570 Affymetrix Fresh tissue hgu133plus2.db 21 21
GSE15605 GPL570 Affymetrix Fresh tissue hgu133plus2.db 16 58 74
GSE29359 GPL6104 Illumina Fresh tissue illuminaHumanv2.db 82 82
GSE30999 GPL570 Affymetrix Fresh tissue hgu133plus2.db 85 85
GSE32407 GPL571 Affymetrix Fresh tissue hgu133a2.db 10 10
GSE32628 GPL6102 Illumina Fresh tissue lumiHumanAll.db 15 15
GSE32924 GPL570 Affymetrix Fresh tissue hgu133plus2.db 8 8
GSE36150 GPL5175 Affymetrix FFPE huex10sttranscriptcluster.db 15 15
GSE39612 GPL570 Affymetrix Fresh tissue hgu133plus2.db 2 4 30 36
GSE42109 GPL570,GPL571 Affymetrix Fresh tissue hgu133a2.db 11 11
GSE42677 GPL571 Affymetrix Fresh tissue hgu133a2.db/hgu133plus2.db 10 10 20
GSE45216 GPL570 Affymetrix Fresh tissue hgu133plus2.db 30 30
GSE46517 GPL96 Affymetrix Fresh tissue hgu133a.db 16 83 99
GSE50451 GPL570,GPL571 Affymetrix Fresh tissue hgu133plus2.db 23 23
GSE52471 GPL571 Affymetrix Fresh tissue hgu133a2.db 13 13
GSE53223 GPL570 Affymetrix Fresh tissue hgu133plus2.db 18 18
GSE53462 GPL10558 Illumina Fresh tissue lumiHumanAll.db 5 16 5 26
GSE66359 GPL570 Affymetrix Fresh tissue hgu133plus2.db 8 8
GSE82105 GPL570 Affymetrix – hgu133plus2.db 6 6 12
Total 320 44 88 68 330 850
a

BCC, Basal cell carcinoma.

b

SCC, Squamous cell carcinoma.

c

MCC, Merkel cell carcinoma.

d

MEL, melanoma.