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. 2025 Aug 25;20(4):535–565. doi: 10.4103/RPS.RPS_123_24

Table 1.

PDB ID and important amino acids involved in the interaction of GP63, FPPS, and NMT proteins with plant compounds.

Protein name Code PDB Resolution Amine acids Reference No.
GP63 1LML 1.86 Å HIS264, HIS268, HIS334, MET345, ALA348, ALA227, SER273, GLY222, THR228, GLU265, ALA350, PRO347,
VAL223, GLY329, GLU220
LEU224, ALA225, SER418, GLN341, GLY222, SER465, VAL223, HIS264, LEU257, PRO460, ALA350
HIS264, ASP342, HIS268, HIS334, MET345, ALA348, PHE272, SER333
(25)
(26)
(17)
FPPS 4K10 2.30 A LYS207, LYS264, ARG107, ASP102, ASP98, ASP99, ASP250, PHE94, LEU95, HIS93, MET101, GLN167 ARG107, GLN167, LYS264, ASP268, THR267, ASP170, LYS207
LYS207, LYS264, ARG107, PHE94, GLN167, THR163, ASP102, ASP98, ASP250, ASP254
ASP98, ILE100, MET101, ASP102, ARG107, ARG108, HIS93, PHE94
(27)
(28)
(19) (29)
NMT 4CGO 1.30 A PHE90, VAL81, PHE232, GLY397, PHE88, HIS219, ASP83, GLY205, TYR80, TYR217, LEU421, TYR345, LEU341, TYR92, ASN167, HIS398, ALA204, VAL374, ALA343, ASN376
TYR92, PHE90, ASN167, PHE88, THR203, HIS219, TYR217, PHE232, TYR326, VAL81, TYR80, GLU82, ILE328,
SER330, LEU341, MET420, LEU421, ASP396, LEU399, ASP396, ASN376, VAL374, TYR345, ALA343
ALA204, TYR202, PHE90, MET420, TYR326, TYR345, LEU421, ASN167, VAL81, ASN383, TYR80, VAL378, LYS173,
GLU82
(9)
(30)
(31)

GP63, Glycoprotein 63; FPPS, farnesyl diphosphate synthase; NMT, N-myristoyltransferase.