Table 2. Hydrogen bonds between the LDOX promoter and MYB1R1 protein.
“Dist” represents distance. Each row indicates the binding sites between amino acid residues of the protein and nucleotide positions in the nucleic acid, along with their specific distance measurements. “Hydrogen bonds” denotes the hydrogen bonding interactions between them.
| Number | MYB1R1 | Dist [Å] | LDOX promoter |
|---|---|---|---|
| 1 | A:ARG 81[NH1] | 3.55 | B:DT1053[O4] |
| 2 | A:ARG 81[NH2] | 3.67 | B:DT1053[O2] |
| 3 | A:ARG 81[NH2] | 2.57 | B:DT1054[O2] |
| 4 | A:ARG 83[NH2] | 3.61 | B:DT1053[O4] |
| 5 | A:VAL 87[N] | 2.37 | B:DG1050[OP1] |
| 6 | A:ARG 110[NH1] | 2.54 | B:DT1045[O4] |
| 7 | A:ARG 110[NH2] | 3.86 | B:DT1047[O4] |
| 8 | A:ARG 110[NH2] | 2.32 | B:DC1046[N3] |
| 9 | A:ARG 114[NH1] | 2.33 | B:DT1045[O2] |
| 10 | A:ARG 120[NH1] | 3.75 | B:DG1050[OP1] |
| 11 | A:GLN 124[NE2] | 2.80 | B:DC1049[O3′] |
| 12 | A:TYR 132[OH] | 2.37 | B:DG1154[O3′] |
| 13 | A:ARG 136[NH1] | 2.83 | B:DG1154[O3′] |
| 14 | A:ASN 138[ND2] | 2.84 | B:DG1180[O5′] |
| 15 | A:ARG 141[NH1] | 3.87 | B:DG1180[O3′] |
| 16 | A:ARG 143[NH2] | 2.75 | B:DT1152[O3′] |
| 17 | A:ARG 143[NH2] | 2.01 | B:DA1153[OP1] |
| 18 | A:ARG 144[NH1] | 3.32 | B:DT1184[O4] |
| 19 | A:ARG 145[NH1] | 3.06 | B:DT1182[O2] |
| 20 | A:ARG 145[NH2] | 3.80 | B:DG1183[O3′] |
| 21 | A:ARG 145[O] | 2.78 | B:DA1181[N1] |
| 22 | A:ARG 141[O] | 3.04 | B:DA1181[N6] |
| 23 | A:ARG 145[O] | 2.84 | B:DA1181[N6] |
| 24 | A:GLU 91[OE1] | 3.81 | B:DC1861[N4] |