Table 2.

The properties of haplotype blocks defined by the dynamic programming algorithm with 90% coverage

Common SNPs/block	No. of block	No. of blocks requiring ≥1 SNPs	Average size/block, kb	Average no. common haplotypes/block	All blocks, %	Common SNPs, %
>10	669	668	17.41	4.45	18.7	52.9
3–10	1,724	1,722	6.28	3.51	48.3	40.0
<3	1,180	1,127	0.84	2.23	33.0	7.1
Total	3,573	3,517	9.07	3.27	100.0	100.0

Common SNPs are the 24,047 SNPs with minor allele frequency ≥ 0.1. Common haplotypes are the haplotypes in each block present more than once in the sample of 20 chromosomes.