Table 3.

The properties of haplotype blocks defined by the dynamic programming algorithm with 70% coverage

Common SNPs/block	No. of block	No. of blocks requiring ≥1 SNPs	Average size/block, kb	Average no. common haplotypes/block	All blocks, %	Common SNPs, %
>10	650	617	30.78	3.93	27.3	79.3
3–10	703	440	7.47	2.81	29.5	14.6
<3	1,028	117	0.60	2.17	43.2	6.1
Total	2,381	1,174	13.61	2.84	100.0	100.0

Common SNPs are the 24,047 SNPs with minor allele frequency ≥0.1. Common haplotypes are the haplotypes in each block present more than once in the sample of 20 chromosomes.