Table 4.

The properties of haplotype blocks defined by the dynamic programming algorithm with 80% coverage and 95% proportion of diversity

Common SNPs/ block	No. of blocks	Average size/ block, kb	Average no. common haplotypes/block	All blocks, %	Common SNPs, %
>10	804	24.60	4.48	42.7	78.6
3–10	786	8.88	3.49	41.7	19.8
<3	294	0.85	2.15	15.6	1.6
Total	1,884	17.20	3.70	100.0	100.0

Common SNPs are the 24,047 SNPs with minor allele frequency ≥ 0.1. Common haplotypes are the haplotypes in each block present more than once in the sample of 20 chromosomes.